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The map label for this gene is ycfH [C]

Identifier: 15897017

GI number: 15897017

Start: 41790

End: 42533

Strand: Reverse

Name: ycfH [C]

Synonym: SSO0046

Alternate gene names: 15897017

Gene position: 42533-41790 (Counterclockwise)

Preceding gene: 15897021

Following gene: 15897013

Centisome position: 1.42

GC content: 31.32

Gene sequence:

>744_bases
ATGTTAGTAGATTCCCATGCTCATATTGATGTAAAGGAATTTGACATGGATAGGGAATTCGTAATAAATGAATGCCAAAT
ATTAATAGTGAATGCTGGTGTCGATTTCCAAAGTAATTTACATACACTGGAGCTAGCTAAAAAATATAAGAATATTATTC
CAGCAATAGGTTTTCATCCAGAATTTGTAAAGGATAAGGTTAATGAGATTGATAAGTGTTTGGAATTAACTAGGTATGGG
AAGATAATAAGTGAAGTCGGTTTAGATTACTTTTGGATAAAAGACGAGGATCTTAGGAAAAAACAAATAGAAGTTCTGGA
GAAATTTTTGCAAATAGCCGAAAAAGAAAACAAACCAGTAATAATCCATATAAGAGGAGGAATGAAAGATTTCTTGGAAA
TAATTAACTCCTATAGGATTAGATTTGTGATACACAGTTTTGAAGGAAGCGTTAAGATAGCCAATAAGGTAATTGAGTAC
GGCGGATTAATATCAATTCCTCCAATAATAGTAAGGGATAAGGTTAGACAAAAAGTTGCTAAGGAAATTCCTTTAGATTT
CATCCTTACAGAGACTGATTCACCGTTTATGGGTCCTGAAAAAATGAGTAGAAATAAACCATGTAACGTGAAAATTGTTG
TTAAGCAAATTAGTCTATTAAAAAGGATTGAAGAAATAGAAATTGAGGAGAAAATATACAAGAATTTTGTCTCTTTATTT
ACTAGTAGTCTTACAACAAGCTAG

Upstream 100 bases:

>100_bases
GTAAAGGTAACTTTTGATGAAAGTGAGGGAGTAGTAAAAATACAGTTATTGAAAGAACCTTGGAAGTAATTTTTTAAGTA
TTTTTTTCTCTTTTTCCTTA

Downstream 100 bases:

>100_bases
CAAAAATGAAGATATTATAAAACCTAAAGTTGGTATATAGTATCTAGGTTCCGGTGCAAGCCACGCTAACATTGAGGATG
AGAATATTGCCATTAGTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLVDSHAHIDVKEFDMDREFVINECQILIVNAGVDFQSNLHTLELAKKYKNIIPAIGFHPEFVKDKVNEIDKCLELTRYG
KIISEVGLDYFWIKDEDLRKKQIEVLEKFLQIAEKENKPVIIHIRGGMKDFLEIINSYRIRFVIHSFEGSVKIANKVIEY
GGLISIPPIIVRDKVRQKVAKEIPLDFILTETDSPFMGPEKMSRNKPCNVKIVVKQISLLKRIEEIEIEEKIYKNFVSLF
TSSLTTS

Sequences:

>Translated_247_residues
MLVDSHAHIDVKEFDMDREFVINECQILIVNAGVDFQSNLHTLELAKKYKNIIPAIGFHPEFVKDKVNEIDKCLELTRYG
KIISEVGLDYFWIKDEDLRKKQIEVLEKFLQIAEKENKPVIIHIRGGMKDFLEIINSYRIRFVIHSFEGSVKIANKVIEY
GGLISIPPIIVRDKVRQKVAKEIPLDFILTETDSPFMGPEKMSRNKPCNVKIVVKQISLLKRIEEIEIEEKIYKNFVSLF
TSSLTTS
>Mature_247_residues
MLVDSHAHIDVKEFDMDREFVINECQILIVNAGVDFQSNLHTLELAKKYKNIIPAIGFHPEFVKDKVNEIDKCLELTRYG
KIISEVGLDYFWIKDEDLRKKQIEVLEKFLQIAEKENKPVIIHIRGGMKDFLEIINSYRIRFVIHSFEGSVKIANKVIEY
GGLISIPPIIVRDKVRQKVAKEIPLDFILTETDSPFMGPEKMSRNKPCNVKIVVKQISLLKRIEEIEIEEKIYKNFVSLF
TSSLTTS

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=258, Percent_Identity=29.8449612403101, Blast_Score=108, Evalue=4e-24,
Organism=Homo sapiens, GI226061614, Length=247, Percent_Identity=30.3643724696356, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI110349734, Length=258, Percent_Identity=29.8449612403101, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI226061853, Length=265, Percent_Identity=29.0566037735849, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=28.3185840707965, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=249, Percent_Identity=24.8995983935743, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI14042943, Length=249, Percent_Identity=24.8995983935743, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=27.5590551181102, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=25.6809338521401, Blast_Score=78, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=242, Percent_Identity=26.8595041322314, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648690, Length=238, Percent_Identity=29.8319327731092, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24586117, Length=260, Percent_Identity=26.1538461538462, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221330018, Length=257, Percent_Identity=26.0700389105058, Blast_Score=75, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28638; Mature: 28638

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01137 TATD_1 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVDSHAHIDVKEFDMDREFVINECQILIVNAGVDFQSNLHTLELAKKYKNIIPAIGFHP
CCCCCCCCCCHHHHCCCHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCH
EFVKDKVNEIDKCLELTRYGKIISEVGLDYFWIKDEDLRKKQIEVLEKFLQIAEKENKPV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCE
IIHIRGGMKDFLEIINSYRIRFVIHSFEGSVKIANKVIEYGGLISIPPIIVRDKVRQKVA
EEEECCCHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KEIPLDFILTETDSPFMGPEKMSRNKPCNVKIVVKQISLLKRIEEIEIEEKIYKNFVSLF
HHCCCEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSSLTTS
HHHHCCC
>Mature Secondary Structure
MLVDSHAHIDVKEFDMDREFVINECQILIVNAGVDFQSNLHTLELAKKYKNIIPAIGFHP
CCCCCCCCCCHHHHCCCHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCH
EFVKDKVNEIDKCLELTRYGKIISEVGLDYFWIKDEDLRKKQIEVLEKFLQIAEKENKPV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCE
IIHIRGGMKDFLEIINSYRIRFVIHSFEGSVKIANKVIEYGGLISIPPIIVRDKVRQKVA
EEEECCCHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
KEIPLDFILTETDSPFMGPEKMSRNKPCNVKIVVKQISLLKRIEEIEIEEKIYKNFVSLF
HHCCCEEEEECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSSLTTS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]