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The map label for this gene is 15896979

Identifier: 15896979

GI number: 15896979

Start: 5351

End: 6334

Strand: Reverse

Name: 15896979

Synonym: SSO0009

Alternate gene names: NA

Gene position: 6334-5351 (Counterclockwise)

Preceding gene: 15896984

Following gene: NA

Centisome position: 0.21

GC content: 35.57

Gene sequence:

>984_bases
ATGATAACTATTGTTTATGATGATATATACAAGTATCATGCTCCAAAGGGGTATCACGTTGAGAATCCCAGTAGAATAGA
CAAGGCATTATCTGCAATTAATCAACTTAAGGTTAAGTTCAAAAAACCTATTAAAGTTGATGATCCACAAATAATACATT
CGGAAGATTACGTTAAATTAGTTGAAAAACACTCCAAATTAGAAGAGAACTTAGACGAAGATACTTATACTAATAGGTAC
ACCTATGAGTCCGCACTTTATGCAATGGGTGGTGCATTAGAGGCATTTGAGACTAATGGTTTTGCATTAGTTAGGCCACC
TGGTCATCACGCTGGAGTTAACGGTAGAGCGTTTGGTGCTCCTACCCTAGGTTTTTGCATTTTTAATAATGTAGCATATC
CCATTAAGAAGTACAAGCTAAAGAGAGTTGCAATTATTGATTTTGATGTGCATTACGGCAATGGCACTCAAGAGATTTTT
TATGATGATCCAGATATTTTGCATATTGATGTGCATCAAGATCCTAGAACTATCTATCCTGGAAACGGTTTCCCAGATAT
GATAGGCGAGAAAGATGCAGAAGGGACGAAGATTAACTTACTAATTCCTCCTTTAGGTAGTGACGATTTATATGAGGAAT
TAATTCCAATTATCCAGGCAATTTTAGATGACTTCAAACCAGCAGTTATCGCTTATTCTGCTGGATTTGACTCTTACATG
GGCGACGGTCTAGCATCAGTGAACGCTACTGAATACACATTCTATAGTTTTGGAGTACTCAGTAATAAATTCACTAAAAA
GTATGCAGTTTTAGAGGGGGGCTACGATAAAGGTTTAATAAAAGGTTTAAAGGCGTTTTTAGAAGGATTTGCAAACATAA
AAATGGAGTATAAAAAATATCAGTCAAACGATTCGGTGAGATCCAGATTTATGAATTATCTGAGTGAAGAGAAGAATATT
TTGAGGAATTATTGGAGTATTTAG

Upstream 100 bases:

>100_bases
ATTAAGTAATCTGCATTAGCTCTCTCCAATTCTTTTTGTACTCTCTGTATTCGATTCATGTTTTAAACTTAAATAGACGT
GTTATAAAAAGATAGGCTAA

Downstream 100 bases:

>100_bases
TATTAGCAAGTGTAATAACATTTTAGTGCTATATTATATGCTGCGTTATAATCTCTATCCGCTTTATATCCACATGCTGG
ACATACAAATAGCGAGCCTA

Product: deacetylase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MITIVYDDIYKYHAPKGYHVENPSRIDKALSAINQLKVKFKKPIKVDDPQIIHSEDYVKLVEKHSKLEENLDEDTYTNRY
TYESALYAMGGALEAFETNGFALVRPPGHHAGVNGRAFGAPTLGFCIFNNVAYPIKKYKLKRVAIIDFDVHYGNGTQEIF
YDDPDILHIDVHQDPRTIYPGNGFPDMIGEKDAEGTKINLLIPPLGSDDLYEELIPIIQAILDDFKPAVIAYSAGFDSYM
GDGLASVNATEYTFYSFGVLSNKFTKKYAVLEGGYDKGLIKGLKAFLEGFANIKMEYKKYQSNDSVRSRFMNYLSEEKNI
LRNYWSI

Sequences:

>Translated_327_residues
MITIVYDDIYKYHAPKGYHVENPSRIDKALSAINQLKVKFKKPIKVDDPQIIHSEDYVKLVEKHSKLEENLDEDTYTNRY
TYESALYAMGGALEAFETNGFALVRPPGHHAGVNGRAFGAPTLGFCIFNNVAYPIKKYKLKRVAIIDFDVHYGNGTQEIF
YDDPDILHIDVHQDPRTIYPGNGFPDMIGEKDAEGTKINLLIPPLGSDDLYEELIPIIQAILDDFKPAVIAYSAGFDSYM
GDGLASVNATEYTFYSFGVLSNKFTKKYAVLEGGYDKGLIKGLKAFLEGFANIKMEYKKYQSNDSVRSRFMNYLSEEKNI
LRNYWSI
>Mature_327_residues
MITIVYDDIYKYHAPKGYHVENPSRIDKALSAINQLKVKFKKPIKVDDPQIIHSEDYVKLVEKHSKLEENLDEDTYTNRY
TYESALYAMGGALEAFETNGFALVRPPGHHAGVNGRAFGAPTLGFCIFNNVAYPIKKYKLKRVAIIDFDVHYGNGTQEIF
YDDPDILHIDVHQDPRTIYPGNGFPDMIGEKDAEGTKINLLIPPLGSDDLYEELIPIIQAILDDFKPAVIAYSAGFDSYM
GDGLASVNATEYTFYSFGVLSNKFTKKYAVLEGGYDKGLIKGLKAFLEGFANIKMEYKKYQSNDSVRSRFMNYLSEEKNI
LRNYWSI

Specific function: Putative deacetylase [H]

COG id: COG0123

COG function: function code BQ; Deacetylases, including yeast histone deacetylase and acetoin utilization protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone deacetylase family [H]

Homologues:

Organism=Homo sapiens, GI30795202, Length=252, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI30795204, Length=252, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI17158039, Length=252, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI169234807, Length=229, Percent_Identity=33.1877729257642, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI153085395, Length=329, Percent_Identity=27.9635258358663, Blast_Score=121, Evalue=9e-28,
Organism=Homo sapiens, GI148539870, Length=330, Percent_Identity=28.4848484848485, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI62750349, Length=229, Percent_Identity=34.9344978165939, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI62750347, Length=229, Percent_Identity=34.9344978165939, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI20070354, Length=293, Percent_Identity=30.0341296928328, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI13128864, Length=307, Percent_Identity=28.9902280130293, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI226529806, Length=181, Percent_Identity=32.0441988950276, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI13128860, Length=230, Percent_Identity=25.2173913043478, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17540334, Length=376, Percent_Identity=28.4574468085106, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17540332, Length=354, Percent_Identity=28.8135593220339, Blast_Score=130, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI193206283, Length=354, Percent_Identity=28.8135593220339, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI193209491, Length=309, Percent_Identity=30.42071197411, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI25154022, Length=266, Percent_Identity=31.5789473684211, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17537347, Length=296, Percent_Identity=30.4054054054054, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI25154020, Length=255, Percent_Identity=31.7647058823529, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17561978, Length=252, Percent_Identity=25.3968253968254, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324307, Length=327, Percent_Identity=30.8868501529052, Blast_Score=121, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6323999, Length=251, Percent_Identity=23.5059760956175, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641720, Length=331, Percent_Identity=28.3987915407855, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281360801, Length=331, Percent_Identity=28.3987915407855, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI281360799, Length=331, Percent_Identity=28.3987915407855, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24642146, Length=292, Percent_Identity=30.8219178082192, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24642144, Length=292, Percent_Identity=30.8219178082192, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24642142, Length=292, Percent_Identity=30.8219178082192, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI281360899, Length=289, Percent_Identity=31.1418685121107, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24657891, Length=230, Percent_Identity=27.3913043478261, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000286 [H]

Pfam domain/function: PF00850 Hist_deacetyl [H]

EC number: NA

Molecular weight: Translated: 37091; Mature: 37091

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITIVYDDIYKYHAPKGYHVENPSRIDKALSAINQLKVKFKKPIKVDDPQIIHSEDYVKL
CEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHH
VEKHSKLEENLDEDTYTNRYTYESALYAMGGALEAFETNGFALVRPPGHHAGVNGRAFGA
HHHHHHHHHCCCCCCCCCCEEHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCCC
PTLGFCIFNNVAYPIKKYKLKRVAIIDFDVHYGNGTQEIFYDDPDILHIDVHQDPRTIYP
CHHHHHHHCCCCCCHHHHEEEEEEEEEEEEEECCCCCEEEECCCCEEEEEECCCCCEECC
GNGFPDMIGEKDAEGTKINLLIPPLGSDDLYEELIPIIQAILDDFKPAVIAYSAGFDSYM
CCCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
GDGLASVNATEYTFYSFGVLSNKFTKKYAVLEGGYDKGLIKGLKAFLEGFANIKMEYKKY
CCCCCCCCCCEEEEEEEHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCEEHHHHH
QSNDSVRSRFMNYLSEEKNILRNYWSI
CCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MITIVYDDIYKYHAPKGYHVENPSRIDKALSAINQLKVKFKKPIKVDDPQIIHSEDYVKL
CEEEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHH
VEKHSKLEENLDEDTYTNRYTYESALYAMGGALEAFETNGFALVRPPGHHAGVNGRAFGA
HHHHHHHHHCCCCCCCCCCEEHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCCCCCCCC
PTLGFCIFNNVAYPIKKYKLKRVAIIDFDVHYGNGTQEIFYDDPDILHIDVHQDPRTIYP
CHHHHHHHCCCCCCHHHHEEEEEEEEEEEEEECCCCCEEEECCCCEEEEEECCCCCEECC
GNGFPDMIGEKDAEGTKINLLIPPLGSDDLYEELIPIIQAILDDFKPAVIAYSAGFDSYM
CCCCHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
GDGLASVNATEYTFYSFGVLSNKFTKKYAVLEGGYDKGLIKGLKAFLEGFANIKMEYKKY
CCCCCCCCCCEEEEEEEHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCEEHHHHH
QSNDSVRSRFMNYLSEEKNILRNYWSI
CCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]