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The map label for this gene is ypdF [C]

Identifier: 15927285

GI number: 15927285

Start: 1748483

End: 1749559

Strand: Direct

Name: ypdF [C]

Synonym: SA1530

Alternate gene names: 15927285

Gene position: 1748483-1749559 (Clockwise)

Preceding gene: 15927283

Following gene: 15927287

Centisome position: 62.12

GC content: 33.05

Gene sequence:

>1077_bases
ATGTTGAGGAGTGTTTATGAAATGACAAAAATATCAAAAATAATAGACGAACTGAACAATCAACAAGCTGATGCAGCATG
GATTACAACACCGTTGAATGTATATTATTTTACTGGATACCGTAGCGAACCCCATGAAAGATTATTTGCATTATTGATTA
AGAAAGATGGTAAACAAGTACTATTTTGTCCAAAAATGGAAGTCGAAGAAGTCAAAGCATCACCTTTCACAGGTGAAATC
GTTGGATATTTAGACACTGAAAATCCTTTTTCACTTTATCCTCAAACAATCAATAAATTACTAATTGAAAGCGAGCACTT
AACAGTAGCACGCCAAAAACAATTAATCTCTGGTTTCAATGTCAATTCATTCGGAGATGTTGATTTAACAATCAAACAAT
TAAGAAATATTAAATCCGAAGATGAAATTAGCAAAATACGTAAAGCTGCTGAGTTAGCAGATAAGTGTATCGAAATAGGT
GTTTCTTATTTAAAAGAAGGTGTGACTGAACGTGAAGTAGTCAACCATATTGAGCAAACTATCAAACAATATGGCGTCAA
TGAAATGAGTTTTGATACGATGGTTTTATTTGGAGATCATGCCGCATCACCTCATGGCACACCAGGAGATCGCAGATTAA
AAAGCAATGAATATGTACTATTTGATTTAGGTGTAATTTATGAGCATTATTGTAGCGATATGACACGTACCATTAAATTT
GGTGAACCTAGCAAAGAAGCACAAGAAATTTATAATATTGTATTAGAAGCAGAAACATCTGCAATCCAAGCAATTAAACC
TGGAATACCTTTAAAAGATATCGATCATATCGCTAGAAATATTATTTCAGAAAAAGGTTATGGTGAATATTTCCCTCATC
GCTTAGGTCATGGTTTAGGATTACAAGAACATGAATATCAAGATGTTTCAAGTACTAATTCTAATTTGTTAGAAGCTGGC
ATGGTTATTACAATCGAACCAGGTATTTATGTACCAGGTGTTGCAGGTGTAAGAATTGAAGATGACATACTTGTCACTAA
TGAAGGATATGAAGTATTAACACATTACGAAAAATAA

Upstream 100 bases:

>100_bases
ATTATAACAAATTCTCAAATTTTAAAAATTGAAAATCTAGTTAATGTATTAGCTCGATTTTGAAATCTAATAATAATTGG
CATAAAATGGAAGTAATATT

Downstream 100 bases:

>100_bases
GGAGTGGGATAAAAATGAAAAGCTTGTTACAAGCACATTCTCATTCAGTCAAACACTGCCAATATAACATTGTAGCGCCT
AAGACATAAATTTTTATCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MLRSVYEMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEI
VGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIG
VSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
GEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAG
MVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK

Sequences:

>Translated_358_residues
MLRSVYEMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEI
VGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIG
VSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
GEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAG
MVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>Mature_358_residues
MLRSVYEMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEI
VGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIG
VSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
GEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAG
MVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=262, Percent_Identity=29.7709923664122, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI149589008, Length=358, Percent_Identity=24.5810055865922, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI260593665, Length=318, Percent_Identity=24.8427672955975, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI264681563, Length=191, Percent_Identity=33.5078534031414, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI93141226, Length=162, Percent_Identity=33.9506172839506, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI40385867, Length=248, Percent_Identity=24.1935483870968, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI264681565, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788728, Length=362, Percent_Identity=33.7016574585635, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789275, Length=379, Percent_Identity=26.6490765171504, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790282, Length=306, Percent_Identity=25.4901960784314, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508215, Length=422, Percent_Identity=24.4075829383886, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17509539, Length=179, Percent_Identity=33.5195530726257, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17507601, Length=272, Percent_Identity=25.7352941176471, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321118, Length=284, Percent_Identity=29.2253521126761, Blast_Score=97, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6320922, Length=295, Percent_Identity=26.1016949152542, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322999, Length=274, Percent_Identity=26.6423357664234, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6323273, Length=256, Percent_Identity=27.734375, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19920384, Length=262, Percent_Identity=26.7175572519084, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21357079, Length=286, Percent_Identity=25.1748251748252, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 40486; Mature: 40486

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRSVYEMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQV
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
LFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFN
EEECCCCHHHHCCCCCCCCEEEEEECCCCCHHCHHHHHHHHHCCCHHHHHHHHHHHHCCC
VNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQT
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHEEC
GEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
LQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
CCCCCCCCHHCCCCHHHHCCEEEEECCCEECCCCCCEEEECCEEEECCCHHHHCCCCC
>Mature Secondary Structure
MLRSVYEMTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQV
CCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEE
LFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFN
EEECCCCHHHHCCCCCCCCEEEEEECCCCCHHCHHHHHHHHHCCCHHHHHHHHHHHHCCC
VNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQT
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKF
HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHEEC
GEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLG
CCCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
LQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
CCCCCCCCHHCCCCHHHHCCEEEEECCCEECCCCCCEEEECCEEEECCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]