Click here to switch to the map view.

The map label for this gene is ahpD

Identifier: 16127928

GI number: 16127928

Start: 3949929

End: 3950480

Strand: Direct

Name: ahpD

Synonym: CC_3698

Alternate gene names: 16127928

Gene position: 3949929-3950480 (Clockwise)

Preceding gene: 16127926

Following gene: 16127929

Centisome position: 98.33

GC content: 69.2

Gene sequence:

>552_bases
GTGTCGATCGAGGCCCTGCGCGCCCGCCTGCCCGACTACGCCCACGATCTTGGGACCAATCTAGCTTTGCTGGTCGACGA
TCCCGCCCTCGATCCGGAGGCGCGCTGGGGGTGCTTCGTCGCCAGCGCCTGCGCGGTCGGCGAGCCGCAGACGCTTCGCG
CGATCGACGCGGCGGCGACCGCAGCAGGCCTGACGGCCGAGGCGAACCGCGCCGCCCGCAAGGCGGCCGCCATGATGGCG
ATGACCAATGTCTATTTTCGCGCGGTGCATCTGATGGAAGGCGCGGCGTATCAGGCCCTACCCTGCCGGCTTCGCTTGAA
TCGGCTCGCCCACGCCGGCGCGCGGGGGGTCACCTACGACCTGTCCTGCGTGGCTGTGTCGGCGATCAATGGCTGCGGCG
CGTGCCTCGACAGCCACGAGGCCGATCTTCGCGGACGGGGTGTCGAACCCACCCAAATCCAGGCCGCCTTGCGTATCGCG
GCGGTTGTATCTGCGGTCGCCCGGACGCTGGCGGCGGAAGCCGCGCTCCATCCCCAGAATTTAGAGATCTGA

Upstream 100 bases:

>100_bases
TCTGGCGCCTCCCGGTCCTGCCGCCTTCCCCCTTGCGGTTCGGACCGGGACGAACGCTCCGCCCAATGCTACTTCGTCAT
CGATGGCCATGGAGCATCAC

Downstream 100 bases:

>100_bases
ACAGGGCCGCGACGCCCGGTCGCGGCGTCGGCCCCTCGACATTCATCTTGTCCGTAAACTAAGTTGTTAACCTCTGGGTA
ACAGATTCGCGGCGTCCGCC

Product: alkyl hydroperoxide reductase D

Products: NA

Alternate protein names: Alkylhydroperoxidase AhpD

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSIEALRARLPDYAHDLGTNLALLVDDPALDPEARWGCFVASACAVGEPQTLRAIDAAATAAGLTAEANRAARKAAAMMA
MTNVYFRAVHLMEGAAYQALPCRLRLNRLAHAGARGVTYDLSCVAVSAINGCGACLDSHEADLRGRGVEPTQIQAALRIA
AVVSAVARTLAAEAALHPQNLEI

Sequences:

>Translated_183_residues
MSIEALRARLPDYAHDLGTNLALLVDDPALDPEARWGCFVASACAVGEPQTLRAIDAAATAAGLTAEANRAARKAAAMMA
MTNVYFRAVHLMEGAAYQALPCRLRLNRLAHAGARGVTYDLSCVAVSAINGCGACLDSHEADLRGRGVEPTQIQAALRIA
AVVSAVARTLAAEAALHPQNLEI
>Mature_182_residues
SIEALRARLPDYAHDLGTNLALLVDDPALDPEARWGCFVASACAVGEPQTLRAIDAAATAAGLTAEANRAARKAAAMMAM
TNVYFRAVHLMEGAAYQALPCRLRLNRLAHAGARGVTYDLSCVAVSAINGCGACLDSHEADLRGRGVEPTQIQAALRIAA
VVSAVARTLAAEAALHPQNLEI

Specific function: Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity

COG id: COG2128

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AhpD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): AHPD_CAUCN (B8GVX4)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002519185.1
- ProteinModelPortal:   B8GVX4
- SMR:   B8GVX4
- GeneID:   7332010
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_03812
- OMA:   PEYAKDL
- ProtClustDB:   CLSK2461481
- HAMAP:   MF_01676
- InterPro:   IPR004674
- InterPro:   IPR004675
- InterPro:   IPR003779
- TIGRFAMs:   TIGR00777
- TIGRFAMs:   TIGR00778

Pfam domain/function: PF02627 CMD

EC number: =1.11.1.15

Molecular weight: Translated: 19117; Mature: 18986

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: ACT_SITE 132-132 ACT_SITE 135-135

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEALRARLPDYAHDLGTNLALLVDDPALDPEARWGCFVASACAVGEPQTLRAIDAAAT
CCHHHHHHHCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
AAGLTAEANRAARKAAAMMAMTNVYFRAVHLMEGAAYQALPCRLRLNRLAHAGARGVTYD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEE
LSCVAVSAINGCGACLDSHEADLRGRGVEPTQIQAALRIAAVVSAVARTLAAEAALHPQN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LEI
CCC
>Mature Secondary Structure 
SIEALRARLPDYAHDLGTNLALLVDDPALDPEARWGCFVASACAVGEPQTLRAIDAAAT
CHHHHHHHCCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
AAGLTAEANRAARKAAAMMAMTNVYFRAVHLMEGAAYQALPCRLRLNRLAHAGARGVTYD
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEE
LSCVAVSAINGCGACLDSHEADLRGRGVEPTQIQAALRIAAVVSAVARTLAAEAALHPQN
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LEI
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA