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The map label for this gene is dgdR [H]

Identifier: 16127740

GI number: 16127740

Start: 3754322

End: 3755227

Strand: Direct

Name: dgdR [H]

Synonym: CC_3510

Alternate gene names: 16127740

Gene position: 3754322-3755227 (Clockwise)

Preceding gene: 16127738

Following gene: 16127747

Centisome position: 93.46

GC content: 72.41

Gene sequence:

>906_bases
ATGCCGCGCCGCACCAATCTGGACCTCGATCTTGTCCGCGCCTTTCTGGTGGTGTGCGAGCAGCGCAGTTTCACCCGGGC
GGGCGAGCGTCTGGGACGATCACAGTCCGCCGTCAGCCTGCAGGTGCGACGTCTGGAGGAGCAGCTGGGTCAACCGCTGC
TGTCGCGCGATCCGCGCCATGTCGCGCCGACCGAACAGGGCGCGGCCTTCCTGCCCCAGGCCCGACGCCTGCTGCGCCTG
AACGACGAGATCCTGGCCGGCCTGGGCGCCGACGATATCGAAGGCGAGGTGCGGCTGGGCGCGCCCGAGGACTTCGCCAC
CCAGCATCTGCCGGCGGTGCTGGGCTCGTTCGCGCGCAGCCACCCGCGCATCGCCCTGACCGTGACCTGCGACCTGACGC
TCAACCTGCTGGACCGTCTGAGCGAGGGCGCCCTGGACCTGGCCCTCGTCAAGCGCGAGCCGCTGGGTCCGGACCTGGGC
GTGCGGGTCTGGCGCGAGCCGCTGGTCTGGGTGGCGCTGGATCCGGAACTGGCCCGGCGCGATGGGCCTGTGCCGCTGGT
GGCCGCTCCGGCCCCTTGCGTCTATCGCAAGCGCGCGGTGGCGGCGCTGGAGGCGGCGGGGCGCGGCTGGCGGGCGACCT
ATACCAGCCCGTCGCTGGCCGGACAGCTGGCGGCCCTGCGTGGGGGTCTTGGCCTCAGCGTTCTGCCGCGCGAGATGGCG
CCGGACGATCTGACGATCCTGTCCGACGACCTGCCCCGCCTGGAAGACGCCGAGATCGCACTCCTGAAGGCGCGGGGAAC
ACCGCCGCCCGCCGCCGAGCGGCTCGCCGACCACATCCTGTCAGCCCTGGATCGGCAACGTTCGCAGGCCGGCGGCGCAT
CGCCGTCAAAGGCGCGGGCGATATAG

Upstream 100 bases:

>100_bases
TGCGCCGCAAGGCGCGGGGGCCCCTCTAAGGGACTTGGCGCGATTTCCCTTGTTGATTTCTGATATAGTCATGATGAGAA
TTGCTCATCATGGAGCCGTC

Downstream 100 bases:

>100_bases
GGTTCCGCAACAATCCGCCCCCTCGTTGTCATCCCGGCCGGGATGACGAGAGGTTTGGGCGTTGCGGACGCGTTGCTCGC
AAGTGCGGCCGACCAGAGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MPRRTNLDLDLVRAFLVVCEQRSFTRAGERLGRSQSAVSLQVRRLEEQLGQPLLSRDPRHVAPTEQGAAFLPQARRLLRL
NDEILAGLGADDIEGEVRLGAPEDFATQHLPAVLGSFARSHPRIALTVTCDLTLNLLDRLSEGALDLALVKREPLGPDLG
VRVWREPLVWVALDPELARRDGPVPLVAAPAPCVYRKRAVAALEAAGRGWRATYTSPSLAGQLAALRGGLGLSVLPREMA
PDDLTILSDDLPRLEDAEIALLKARGTPPPAAERLADHILSALDRQRSQAGGASPSKARAI

Sequences:

>Translated_301_residues
MPRRTNLDLDLVRAFLVVCEQRSFTRAGERLGRSQSAVSLQVRRLEEQLGQPLLSRDPRHVAPTEQGAAFLPQARRLLRL
NDEILAGLGADDIEGEVRLGAPEDFATQHLPAVLGSFARSHPRIALTVTCDLTLNLLDRLSEGALDLALVKREPLGPDLG
VRVWREPLVWVALDPELARRDGPVPLVAAPAPCVYRKRAVAALEAAGRGWRATYTSPSLAGQLAALRGGLGLSVLPREMA
PDDLTILSDDLPRLEDAEIALLKARGTPPPAAERLADHILSALDRQRSQAGGASPSKARAI
>Mature_300_residues
PRRTNLDLDLVRAFLVVCEQRSFTRAGERLGRSQSAVSLQVRRLEEQLGQPLLSRDPRHVAPTEQGAAFLPQARRLLRLN
DEILAGLGADDIEGEVRLGAPEDFATQHLPAVLGSFARSHPRIALTVTCDLTLNLLDRLSEGALDLALVKREPLGPDLGV
RVWREPLVWVALDPELARRDGPVPLVAAPAPCVYRKRAVAALEAAGRGWRATYTSPSLAGQLAALRGGLGLSVLPREMAP
DDLTILSDDLPRLEDAEIALLKARGTPPPAAERLADHILSALDRQRSQAGGASPSKARAI

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=286, Percent_Identity=32.5174825174825, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787806, Length=239, Percent_Identity=28.0334728033473, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787589, Length=193, Percent_Identity=35.7512953367876, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788887, Length=169, Percent_Identity=33.1360946745562, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=147, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=146, Percent_Identity=31.5068493150685, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=246, Percent_Identity=24.7967479674797, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=168, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=28.7449392712551, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=253, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082132, Length=253, Percent_Identity=24.901185770751, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=187, Percent_Identity=30.4812834224599, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32527; Mature: 32396

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRTNLDLDLVRAFLVVCEQRSFTRAGERLGRSQSAVSLQVRRLEEQLGQPLLSRDPRH
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCC
VAPTEQGAAFLPQARRLLRLNDEILAGLGADDIEGEVRLGAPEDFATQHLPAVLGSFARS
CCCCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHC
HPRIALTVTCDLTLNLLDRLSEGALDLALVKREPLGPDLGVRVWREPLVWVALDPELARR
CCCEEEEEEECHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCCCEEEEEECHHHHHC
DGPVPLVAAPAPCVYRKRAVAALEAAGRGWRATYTSPSLAGQLAALRGGLGLSVLPREMA
CCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCEECCCCCC
PDDLTILSDDLPRLEDAEIALLKARGTPPPAAERLADHILSALDRQRSQAGGASPSKARA
CCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
I
C
>Mature Secondary Structure 
PRRTNLDLDLVRAFLVVCEQRSFTRAGERLGRSQSAVSLQVRRLEEQLGQPLLSRDPRH
CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCC
VAPTEQGAAFLPQARRLLRLNDEILAGLGADDIEGEVRLGAPEDFATQHLPAVLGSFARS
CCCCCCCCHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHC
HPRIALTVTCDLTLNLLDRLSEGALDLALVKREPLGPDLGVRVWREPLVWVALDPELARR
CCCEEEEEEECHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHCCCEEEEEECHHHHHC
DGPVPLVAAPAPCVYRKRAVAALEAAGRGWRATYTSPSLAGQLAALRGGLGLSVLPREMA
CCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCCEECCCCCC
PDDLTILSDDLPRLEDAEIALLKARGTPPPAAERLADHILSALDRQRSQAGGASPSKARA
CCCCEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]