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The map label for this gene is 16127733

Identifier: 16127733

GI number: 16127733

Start: 3746735

End: 3747307

Strand: Direct

Name: 16127733

Synonym: CC_3503

Alternate gene names: NA

Gene position: 3746735-3747307 (Clockwise)

Preceding gene: 16127732

Following gene: 16127734

Centisome position: 93.27

GC content: 66.32

Gene sequence:

>573_bases
ATGCGGGCCATCGCTCTGACCCTGGCCCTGCTGGCCGCCACGCCGCTGGCCGGTTGTGGTGAGAAGGCCGCGCAAGACGC
GGCCGGCGCGGTGATCAAGATCGGCGGACCGTTCCAGCTGACCGACATGAACGGCAAGCCGGTGACGGAGAAGTCCCTGC
TGGGCAAACCCACGGCGGTGTTCTTCGGCTTCACCTACTGTCCGGAGGTCTGCCCGACCACCCTGACCGAGATGACCGCC
TGGCTGAAGGCCCTGGGCAAGGACGCCGACAAGCTGAACGTGGTCTTGATCACCGTGGACCCCGAACGCGACACGCCCGC
GCAGCTGAAGGAATACCTGTCCAACTTCGACCCGCGCATCCAAGGGTTCACCGGCACGCCCGACGCCATCGCCAAGACGG
CCCGGGCCTACCGCGTCTACTATCAGAAGGTCCCGCTGGACGGCGGCGGCTACACGATCGACCATTCCTCGGCGATCTAT
CTGTTCGACGCCAAGGGGCGGTTCGTCTCGCCGATCGCCTACCAGGCGCCGCAGGATCGGGCCCTGGGCCAGTTGCGGGA
CCTCTTGAAGTAA

Upstream 100 bases:

>100_bases
AGGTGCCCCTGACCCTCAAGTTCCAGAAGGCCAAGCCGGTCAAGGTGACCGCCGTGGTCAAGATGCCGCCCAAGCCGGCG
ATGTCGGGGATGCATCACTG

Downstream 100 bases:

>100_bases
CCCGGGCAAATCCTTTCCCGGCCCGGATCCCCTGCAAGGCCGCCGCACGTTCCCCAACGTCGGCGGCCTTTTTGCGTCGC
TTCTCGCGCCGAGGCCCGAC

Product: SCO1/2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MRAIALTLALLAATPLAGCGEKAAQDAAGAVIKIGGPFQLTDMNGKPVTEKSLLGKPTAVFFGFTYCPEVCPTTLTEMTA
WLKALGKDADKLNVVLITVDPERDTPAQLKEYLSNFDPRIQGFTGTPDAIAKTARAYRVYYQKVPLDGGGYTIDHSSAIY
LFDAKGRFVSPIAYQAPQDRALGQLRDLLK

Sequences:

>Translated_190_residues
MRAIALTLALLAATPLAGCGEKAAQDAAGAVIKIGGPFQLTDMNGKPVTEKSLLGKPTAVFFGFTYCPEVCPTTLTEMTA
WLKALGKDADKLNVVLITVDPERDTPAQLKEYLSNFDPRIQGFTGTPDAIAKTARAYRVYYQKVPLDGGGYTIDHSSAIY
LFDAKGRFVSPIAYQAPQDRALGQLRDLLK
>Mature_190_residues
MRAIALTLALLAATPLAGCGEKAAQDAAGAVIKIGGPFQLTDMNGKPVTEKSLLGKPTAVFFGFTYCPEVCPTTLTEMTA
WLKALGKDADKLNVVLITVDPERDTPAQLKEYLSNFDPRIQGFTGTPDAIAKTARAYRVYYQKVPLDGGGYTIDHSSAIY
LFDAKGRFVSPIAYQAPQDRALGQLRDLLK

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=139, Percent_Identity=38.8489208633094, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI281182727, Length=136, Percent_Identity=36.7647058823529, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI281182722, Length=136, Percent_Identity=36.7647058823529, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI281182716, Length=136, Percent_Identity=36.7647058823529, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI153791313, Length=136, Percent_Identity=36.7647058823529, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=153, Percent_Identity=37.2549019607843, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6319498, Length=174, Percent_Identity=41.3793103448276, Blast_Score=142, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6319511, Length=200, Percent_Identity=38.5, Blast_Score=133, Evalue=2e-32,
Organism=Drosophila melanogaster, GI19920710, Length=155, Percent_Identity=34.8387096774194, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 20473; Mature: 20473

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAIALTLALLAATPLAGCGEKAAQDAAGAVIKIGGPFQLTDMNGKPVTEKSLLGKPTAV
CHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCCEEEECCCCCCCCHHHHCCCCHHE
FFGFTYCPEVCPTTLTEMTAWLKALGKDADKLNVVLITVDPERDTPAQLKEYLSNFDPRI
EEEHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCC
QGFTGTPDAIAKTARAYRVYYQKVPLDGGGYTIDHSSAIYLFDAKGRFVSPIAYQAPQDR
CCCCCCHHHHHHHHHHHHHHHEECCCCCCCEEEECCCEEEEEECCCCEECCHHCCCCCHH
ALGQLRDLLK
HHHHHHHHHC
>Mature Secondary Structure
MRAIALTLALLAATPLAGCGEKAAQDAAGAVIKIGGPFQLTDMNGKPVTEKSLLGKPTAV
CHHHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCCEEEECCCCCCCCHHHHCCCCHHE
FFGFTYCPEVCPTTLTEMTAWLKALGKDADKLNVVLITVDPERDTPAQLKEYLSNFDPRI
EEEHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCC
QGFTGTPDAIAKTARAYRVYYQKVPLDGGGYTIDHSSAIYLFDAKGRFVSPIAYQAPQDR
CCCCCCHHHHHHHHHHHHHHHEECCCCCCCEEEECCCEEEEEECCCCEECCHHCCCCCHH
ALGQLRDLLK
HHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]