| Definition | Caulobacter crescentus CB15 chromosome, complete genome. |
|---|---|
| Accession | NC_002696 |
| Length | 4,016,947 |
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The map label for this gene is yncD [H]
Identifier: 16127730
GI number: 16127730
Start: 3742657
End: 3744795
Strand: Direct
Name: yncD [H]
Synonym: CC_3500
Alternate gene names: 16127730
Gene position: 3742657-3744795 (Clockwise)
Preceding gene: 16127729
Following gene: 16127731
Centisome position: 93.17
GC content: 67.74
Gene sequence:
>2139_bases GTGAACGCGCGCGCCCTCCCCGGCGCGCCCTGGATCATTCACGGCCGCCGCCTGGCGGCCGAAGGACGCTGTATTTCCAT GAAGTCTCTTCTGCTGGCCACCACGGCCGCCCTGGCCTTTGCGCCCGCCGCCCTGGCCTCGACCGCCTTTGCGGCCGACA CCACCGCCGACGCGACGCAAGTCTCGTCGGTCATCGTCACCGCCCGTCCCAATCCGGAAGACCCACCGGTCGTCGCCGAC GCCCGCAAGCGCCTGTCGGAAACCCCCGGCGCGGTGTCGGTGATCTCTCAGGAATCCTACATCAACCGCCAGACCCTGGC GCTCGACGACATGCTGCGCGACGCGCCGGGCGTCTACGCCCAGCGCAAGTGGGGCGGCGACATCCGCGTGTCGATCCGGG GTTCGGGCATCGGCAACGCCAATCACAACCGGGGCCTCCTGATCGCCCAGGACGGCGTGCCGCTGAACGAGGCCGACGGC TTTGGCGACACCCAGATCGCCGATCCGCTGAACACCCGCTACGCCGAGGTCTATCGCGGCGGCAACGCCCTGCGCTTCGG CGGCGCCCTGTTGGGCGGGGCGATCAACATGGTCACGCCCACCGGCAAGGACGCCGGCTTCCAGAACCGCATCCGCCTGG ACGGCGGCTCGTACGGCCTGGCCCGTCAGCACGTGGCCCTGGCGCGCCAGAGCGGCGACTGGGACGTCTTCGTCGCCGCC ACCAACCAGACCAGCCAGGGCTGGCGCTCGCAAAGCCAGCAGAACATCCAGTTCGGCTCGCTGAACATCGGCCGCTCGTT CGGCGAGGACCGCGAGGTGCGGTTCATCGTCAATGGCTCGAACATCAACCAGGAAATCCCCGGTTCGCTGACCCTGGCGC AGTTCAACGCCAATCCCCGCCAATCGTCCGCCGGCAACCTGGCCAATGACAACGGCCGCAACCAGCGCGGCGTGCGCGGC TCGCTGCGCACCACCTGGCGTCTGGACGACAGCCTCGTGTTCGAAGGCGCGGTCTATGCGGTGTGGAAGGACCTGGATCA CCCGATCTTCCAGGTCATCGACCAGCAGAGCCGCAACTACGGCGCCTTTGGTCGCTTCGACTGGGACGGCGAGATCGGCG GCAAGCGCGCCGACGCCTTCTTCGGCGCCTGGTACCGCTCGGGTGATCTGGACTCCAACTTCTACGTCAACAACCGCGGC GGCCGCGGCGCGCCGACCTCGCGCACGCTGCAAAACGCCGAGGCGATCGACGTGTTCGGCGAAGGCCGCGTGTTCGTGAC CGATCAGGTCGCGATCGTGGCCGGCGCCACCTGGGGCCAGGCCAAGCGCGACTATCAAAGCTTCGCCATCCCCGGCGTCG CCTCGACCTTCAACCTGAAGGCCGACAAGACCTATGACTGGGTCTCCCCGCGCATCGGCCTGCTCTGGCAAGGCGAAGGC GGCGACCAGGTGTTCGCCAACCTGACCCGCTCGGTCGAACCGCCGAACTTCGGCTCGATGTCGCCGACCAATATCGGCTT TGCGCCGGTGCGGTCGCAGAAGGCCTGGACGGGCGAGGTCGGCGCGCGCGGCCATCGCGGTCCGTTCACCTACGACGTGA CCCTGTACCGCGCCGAGCTGAAGGGCGAGATGCTGCAGTACACGGTTAATCCGTCGATCCCGGCCTCGACCTTCAACGCC GACAAGACCCTGCACCAGGGGATCGAGGCGGCCCTGGACTGGGCGGTGGCGCCGCAGTGGCGGATCCGTCAGACCTGGAC CTATTCGGACTTCCGCTTCAAGGACGACGTCCAGTACGGCGACAATCGCCTGCCGATCGTGCCCAAGACCTTCTACCGCT CGGAAGTCCGCTATGACGATCCGCGCGGCTGGTTCCTGGCCCCGTCGGTCGAGTGGTCGGCCAGCGATCAGTGGATCGAC TACAGGAACACGAAAAAGGCCCCCGGCTACGCGATCCTCAACCTGAACGCCGGCTGGAAGGTCAATGACACCGTCTCGCT GTTCCTCGACGCGCGGAACCTGACCGACAAGGCCTATGTCTCCAACACCGGGGCTGCGACCACCTGGACGGCGGCCAGCG CCGTGCTGTGGCCGGGCGATGGCCGCTCGGTGTTCGGCGGCGTGACCGTCAGCTTCTAA
Upstream 100 bases:
>100_bases GCCCGCACGCTTGCGCCGGGCCGGGGCCTGGCCGCGCCGCCTCCGCCGGCCACAGGCCCGCCCCTCGTCCTGATCTGAGC CTCGATCCTCACGATCGAGC
Downstream 100 bases:
>100_bases CCCCTAAAAGTCTGGTCCTGACGGGGCGGCGGGTCGCAAGCGCCGCCGCCCCAAACCCGGAGCATCGCGATGACCGCGAT CGACAATTCCGAGACCCCCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQVSSVIVTARPNPEDPPVVAD ARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYAQRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADG FGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLANDNGRNQRGVRG SLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRG GRGAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNA DKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYGDNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWID YRNTKKAPGYAILNLNAGWKVNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF
Sequences:
>Translated_712_residues MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQVSSVIVTARPNPEDPPVVAD ARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYAQRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADG FGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLANDNGRNQRGVRG SLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRG GRGAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNA DKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYGDNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWID YRNTKKAPGYAILNLNAGWKVNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF >Mature_712_residues MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQVSSVIVTARPNPEDPPVVAD ARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYAQRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADG FGDTQIADPLNTRYAEVYRGGNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPRQSSAGNLANDNGRNQRGVRG SLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNYGAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRG GRGAPTSRTLQNAEAIDVFGEGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAELKGEMLQYTVNPSIPASTFNA DKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYGDNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWID YRNTKKAPGYAILNLNAGWKVNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF
Specific function: Probable receptor, tonB-dependent [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=685, Percent_Identity=25.5474452554745, Blast_Score=127, Evalue=3e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77689; Mature: 77689
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQ CCCCCCCCCCEEEECCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE VSSVIVTARPNPEDPPVVADARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYA EEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHCCCCCEE QRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADGFGDTQIADPLNTRYAEVYRG EEECCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC GNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA CCEEEECCEECCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPR CCCCCHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC QSSAGNLANDNGRNQRGVRGSLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNY CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCEEEEEHHHCCCHHHHHHHHCCCCC GAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRGGRGAPTSRTLQNAEAIDVFG CCCEEECCCCCCCCCCHHHHEEHEEECCCCCCCEEEECCCCCCCCCHHHHCCCCEEEEEC EGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG CCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAEL CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC KGEMLQYTVNPSIPASTFNADKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYG CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEECCCCCCC DNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWIDYRNTKKAPGYAILNLNAGWK CCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCEEEEECCCCCE VNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF ECCEEEEEEECCCCCCCCEECCCCCCEEEECCEEEEECCCCCEEECCEEEEC >Mature Secondary Structure MNARALPGAPWIIHGRRLAAEGRCISMKSLLLATTAALAFAPAALASTAFAADTTADATQ CCCCCCCCCCEEEECCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE VSSVIVTARPNPEDPPVVADARKRLSETPGAVSVISQESYINRQTLALDDMLRDAPGVYA EEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHCCCCCEE QRKWGGDIRVSIRGSGIGNANHNRGLLIAQDGVPLNEADGFGDTQIADPLNTRYAEVYRG EEECCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCC GNALRFGGALLGGAINMVTPTGKDAGFQNRIRLDGGSYGLARQHVALARQSGDWDVFVAA CCEEEECCEECCCEEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEE TNQTSQGWRSQSQQNIQFGSLNIGRSFGEDREVRFIVNGSNINQEIPGSLTLAQFNANPR CCCCCHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCC QSSAGNLANDNGRNQRGVRGSLRTTWRLDDSLVFEGAVYAVWKDLDHPIFQVIDQQSRNY CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCEEEEEHHHCCCHHHHHHHHCCCCC GAFGRFDWDGEIGGKRADAFFGAWYRSGDLDSNFYVNNRGGRGAPTSRTLQNAEAIDVFG CCCEEECCCCCCCCCCHHHHEEHEEECCCCCCCEEEECCCCCCCCCHHHHCCCCEEEEEC EGRVFVTDQVAIVAGATWGQAKRDYQSFAIPGVASTFNLKADKTYDWVSPRIGLLWQGEG CCEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCC GDQVFANLTRSVEPPNFGSMSPTNIGFAPVRSQKAWTGEVGARGHRGPFTYDVTLYRAEL CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC KGEMLQYTVNPSIPASTFNADKTLHQGIEAALDWAVAPQWRIRQTWTYSDFRFKDDVQYG CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEECCCCCCC DNRLPIVPKTFYRSEVRYDDPRGWFLAPSVEWSASDQWIDYRNTKKAPGYAILNLNAGWK CCCCCCCCHHHHCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCCCCCEEEEECCCCCE VNDTVSLFLDARNLTDKAYVSNTGAATTWTAASAVLWPGDGRSVFGGVTVSF ECCEEEEEEECCCCCCCCEECCCCCCEEEECCEEEEECCCCCEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]