Click here to switch to the map view.

The map label for this gene is yngJ [H]

Identifier: 16127684

GI number: 16127684

Start: 3694960

End: 3696267

Strand: Direct

Name: yngJ [H]

Synonym: CC_3454

Alternate gene names: 16127684

Gene position: 3694960-3696267 (Clockwise)

Preceding gene: 16127683

Following gene: 16127685

Centisome position: 91.98

GC content: 66.06

Gene sequence:

>1308_bases
TTGACCATGGACTTCCGACTGTCACCGGAACTTTCGGCCTATCTCGAAGAGCTCGACGCCTTCATCGCGAAGGAGATCGC
CCCGCTCCAGGCGAAGGACGACAACCAGCGCTTCTTCGACCACCGCCGCGAATGGGCCCGCACCGACTGGGACGCCGGCG
GCCTGCCGCGCCACGAATGGGAGGAACTGCTCGCCAAGGCCCGCAAGTTGGCCGACAAGGCGGGCCACTATCGCTATGCG
CTCCCCAAGGCCTATGGCGGCCAGGACGGCACCAATCTTGGCATGGCGGTGATCCGCGAGCACCTGGCGTCCAAGGGCCT
GGGCCTGTTCAACGACCTGCAGAACGAGCACTCGATCGTCGGCAACAATCCGTTCGTGCTGATGATCCGCGACTTCGGCC
GGCCCGACCAGCAGCACCTGATCGAGGACATGCTGGATCGCGGCGCCTTCCGCCCGACCTTTGGCCTGACCGAACCCGAC
CACGGCTCGGACGCCACCCACATGGAGACCCAGGCGGTCCGCGAGGAACGCCATGGCCAGGCCGGCTGGCGGATCGACGG
CGAGAAGATGTGGACCACGGGCATGCACGTGGCCACGCACTGCTGCCTGTTCGCCCGCACCAGCGGCCAGGACGGCGACG
CGCGCGGCATCACCGCCTACCTTGTCCCGGCCCACGCGCCCGGCGTGAAGATCGAGGAGTATCTCTGGACCTTCAACATG
CCGACCGACCACCCGCGCGTCAGCTTCACCGACGTGTGGGTTCCCGACAGCGCGATGTTCGGTCCGGAAGGCGGGGGCCT
GGCCCTAGCCCAGCACTTCGTGCACGAGAACCGCATCCGCCAGGCGGCCTCGAGCCTCGGCGCAGCCGCCTACTGCATCG
AGGAGAGCATCAAGTACGCCCGCGCCCGCAAGCCGTTCGGCAAGGCGCTGTCGGAAAATCAGGCCATCCAGTTCCCGATC
GTCGAACTCTCGACCCAGGTCGAGATGCTGCGCCTGTTGATCCGCAAGACGGCCTGGGAGATGGACCAGATGTCCAAGCC
CGAGGTCGAAAAGCGCCTCTCGGACAAGGTCTCGATGTGTAACTACTGGGCCAACCGCCTGTGCTGCGAGGCCGCCGACC
GGGCCATGCAGATCCACGGCGGCATCGGCTATTCGCGCCACAAGCCGTTCGAGCACATCTACCGCCACCACCGCCGCTAC
CGGATCACCGAGGGCGCCGAGGAGATCCAGATGCGCAAGGTCGCCGCCTGGCTGTTCGGCTATATGGGTCCGCGCAAGCA
GGCGTTTGCGGAGATGGATAAGGTTTAA

Upstream 100 bases:

>100_bases
CAAGGACCGGTTAAGGCCCGTTCCGCAGGGGCACGATTGGCCGCCGCCGCCGCCCGCGCTTTAGTCGCCGCTATAAAGAG
AACAATGCGCGCAGGGAGGC

Downstream 100 bases:

>100_bases
CCTCTGCGCCCCTGACGCGTATCAATTCCCGCGCTATCTAACAGCGGTATGCGAGCCATCATGGTCGCATACCGCAGGCT
CGCCTGGTTTGGTGGAGGGA

Product: acyl-CoA dehydrogenase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MTMDFRLSPELSAYLEELDAFIAKEIAPLQAKDDNQRFFDHRREWARTDWDAGGLPRHEWEELLAKARKLADKAGHYRYA
LPKAYGGQDGTNLGMAVIREHLASKGLGLFNDLQNEHSIVGNNPFVLMIRDFGRPDQQHLIEDMLDRGAFRPTFGLTEPD
HGSDATHMETQAVREERHGQAGWRIDGEKMWTTGMHVATHCCLFARTSGQDGDARGITAYLVPAHAPGVKIEEYLWTFNM
PTDHPRVSFTDVWVPDSAMFGPEGGGLALAQHFVHENRIRQAASSLGAAAYCIEESIKYARARKPFGKALSENQAIQFPI
VELSTQVEMLRLLIRKTAWEMDQMSKPEVEKRLSDKVSMCNYWANRLCCEAADRAMQIHGGIGYSRHKPFEHIYRHHRRY
RITEGAEEIQMRKVAAWLFGYMGPRKQAFAEMDKV

Sequences:

>Translated_435_residues
MTMDFRLSPELSAYLEELDAFIAKEIAPLQAKDDNQRFFDHRREWARTDWDAGGLPRHEWEELLAKARKLADKAGHYRYA
LPKAYGGQDGTNLGMAVIREHLASKGLGLFNDLQNEHSIVGNNPFVLMIRDFGRPDQQHLIEDMLDRGAFRPTFGLTEPD
HGSDATHMETQAVREERHGQAGWRIDGEKMWTTGMHVATHCCLFARTSGQDGDARGITAYLVPAHAPGVKIEEYLWTFNM
PTDHPRVSFTDVWVPDSAMFGPEGGGLALAQHFVHENRIRQAASSLGAAAYCIEESIKYARARKPFGKALSENQAIQFPI
VELSTQVEMLRLLIRKTAWEMDQMSKPEVEKRLSDKVSMCNYWANRLCCEAADRAMQIHGGIGYSRHKPFEHIYRHHRRY
RITEGAEEIQMRKVAAWLFGYMGPRKQAFAEMDKV
>Mature_434_residues
TMDFRLSPELSAYLEELDAFIAKEIAPLQAKDDNQRFFDHRREWARTDWDAGGLPRHEWEELLAKARKLADKAGHYRYAL
PKAYGGQDGTNLGMAVIREHLASKGLGLFNDLQNEHSIVGNNPFVLMIRDFGRPDQQHLIEDMLDRGAFRPTFGLTEPDH
GSDATHMETQAVREERHGQAGWRIDGEKMWTTGMHVATHCCLFARTSGQDGDARGITAYLVPAHAPGVKIEEYLWTFNMP
TDHPRVSFTDVWVPDSAMFGPEGGGLALAQHFVHENRIRQAASSLGAAAYCIEESIKYARARKPFGKALSENQAIQFPIV
ELSTQVEMLRLLIRKTAWEMDQMSKPEVEKRLSDKVSMCNYWANRLCCEAADRAMQIHGGIGYSRHKPFEHIYRHHRRYR
ITEGAEEIQMRKVAAWLFGYMGPRKQAFAEMDKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557231, Length=339, Percent_Identity=29.7935103244838, Blast_Score=128, Evalue=9e-30,
Organism=Homo sapiens, GI187960098, Length=339, Percent_Identity=29.7935103244838, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI4557233, Length=342, Percent_Identity=29.2397660818713, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI4501859, Length=337, Percent_Identity=28.486646884273, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI7656849, Length=327, Percent_Identity=28.7461773700306, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI21361497, Length=425, Percent_Identity=26.1176470588235, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI38505218, Length=295, Percent_Identity=27.4576271186441, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI4501857, Length=413, Percent_Identity=24.455205811138, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI48976061, Length=277, Percent_Identity=28.158844765343, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI211971008, Length=277, Percent_Identity=28.158844765343, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4557235, Length=430, Percent_Identity=25.1162790697674, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI76496475, Length=430, Percent_Identity=25.1162790697674, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI226958412, Length=406, Percent_Identity=22.1674876847291, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI226958414, Length=331, Percent_Identity=23.2628398791541, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI7669494, Length=285, Percent_Identity=24.9122807017544, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4503943, Length=270, Percent_Identity=25.1851851851852, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI87081958, Length=410, Percent_Identity=25.609756097561, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1786223, Length=417, Percent_Identity=26.8585131894484, Blast_Score=103, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17534899, Length=356, Percent_Identity=29.7752808988764, Blast_Score=134, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI17569725, Length=347, Percent_Identity=28.5302593659942, Blast_Score=132, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17570075, Length=421, Percent_Identity=25.41567695962, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17533517, Length=370, Percent_Identity=27.8378378378378, Blast_Score=119, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI17505929, Length=360, Percent_Identity=28.3333333333333, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17506239, Length=350, Percent_Identity=26.8571428571429, Blast_Score=112, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17508101, Length=341, Percent_Identity=26.9794721407625, Blast_Score=111, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI17551932, Length=357, Percent_Identity=27.1708683473389, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71985184, Length=342, Percent_Identity=25.7309941520468, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17562446, Length=294, Percent_Identity=27.5510204081633, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI71990804, Length=274, Percent_Identity=26.6423357664234, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71985192, Length=299, Percent_Identity=24.4147157190635, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17538396, Length=407, Percent_Identity=24.0786240786241, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17534353, Length=319, Percent_Identity=24.7648902821317, Blast_Score=77, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI32563615, Length=248, Percent_Identity=27.8225806451613, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24660351, Length=333, Percent_Identity=30.6306306306306, Blast_Score=136, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24666513, Length=343, Percent_Identity=28.8629737609329, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24646207, Length=303, Percent_Identity=30.03300330033, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI21356377, Length=402, Percent_Identity=26.865671641791, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI281363737, Length=410, Percent_Identity=24.8780487804878, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI21355753, Length=402, Percent_Identity=25.3731343283582, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920834, Length=206, Percent_Identity=30.0970873786408, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 49604; Mature: 49473

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMDFRLSPELSAYLEELDAFIAKEIAPLQAKDDNQRFFDHRREWARTDWDAGGLPRHEW
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
EELLAKARKLADKAGHYRYALPKAYGGQDGTNLGMAVIREHLASKGLGLFNDLQNEHSIV
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCEE
GNNPFVLMIRDFGRPDQQHLIEDMLDRGAFRPTFGLTEPDHGSDATHMETQAVREERHGQ
CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
AGWRIDGEKMWTTGMHVATHCCLFARTSGQDGDARGITAYLVPAHAPGVKIEEYLWTFNM
CCCEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCHHHHEEEECC
PTDHPRVSFTDVWVPDSAMFGPEGGGLALAQHFVHENRIRQAASSLGAAAYCIEESIKYA
CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RARKPFGKALSENQAIQFPIVELSTQVEMLRLLIRKTAWEMDQMSKPEVEKRLSDKVSMC
HHCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
NYWANRLCCEAADRAMQIHGGIGYSRHKPFEHIYRHHRRYRITEGAEEIQMRKVAAWLFG
HHHHHHHHHHHHHHHEEHHCCCCCCCCCCHHHHHHHHHCEECCCCHHHHHHHHHHHHHHH
YMGPRKQAFAEMDKV
HCCCHHHHHHHHHCC
>Mature Secondary Structure 
TMDFRLSPELSAYLEELDAFIAKEIAPLQAKDDNQRFFDHRREWARTDWDAGGLPRHEW
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
EELLAKARKLADKAGHYRYALPKAYGGQDGTNLGMAVIREHLASKGLGLFNDLQNEHSIV
HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCEE
GNNPFVLMIRDFGRPDQQHLIEDMLDRGAFRPTFGLTEPDHGSDATHMETQAVREERHGQ
CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
AGWRIDGEKMWTTGMHVATHCCLFARTSGQDGDARGITAYLVPAHAPGVKIEEYLWTFNM
CCCEECCCHHHHHHHHHHHHHHHHEECCCCCCCCCCEEEEEEECCCCCCCHHHHEEEECC
PTDHPRVSFTDVWVPDSAMFGPEGGGLALAQHFVHENRIRQAASSLGAAAYCIEESIKYA
CCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RARKPFGKALSENQAIQFPIVELSTQVEMLRLLIRKTAWEMDQMSKPEVEKRLSDKVSMC
HHCCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
NYWANRLCCEAADRAMQIHGGIGYSRHKPFEHIYRHHRRYRITEGAEEIQMRKVAAWLFG
HHHHHHHHHHHHHHHEEHHCCCCCCCCCCHHHHHHHHHCEECCCCHHHHHHHHHHHHHHH
YMGPRKQAFAEMDKV
HCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]