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The map label for this gene is ydfF [H]

Identifier: 16127300

GI number: 16127300

Start: 3299061

End: 3299765

Strand: Direct

Name: ydfF [H]

Synonym: CC_3070

Alternate gene names: 16127300

Gene position: 3299061-3299765 (Clockwise)

Preceding gene: 16127298

Following gene: 16127303

Centisome position: 82.13

GC content: 74.18

Gene sequence:

>705_bases
ATGGACGCCAACATCGCCTCCCCCGCCGCCCTGATCGGCGACCCGACCCGCGCGGCCATGCTGCAGGTCCTGCAGGACGG
CCGGGCCCAACCCGCCAGCGCCCTGGCCTGGGCCGCCGGCGTCACCGCCCAGGCGGCGAGCAACCATCTGGCCAAGCTGG
TCGACGGCGGGCTGCTGGCGGTCGAGCGCCAGGGCCGCCACCGCTACTACCGGCTGGCCTCGGCCGAGGTGGCGCACGCG
ATCGAGGCCTTGTCGGTGATCGCCGCTCCGGTGCGTTCGCTGGAGATCCCGCGCTCGCCCAAGGCCCGCGCCCTGCGCGA
CGCGCGCTGCTGCTACGGCCATCTGGCCGGACGCCTGGGCGTGAAGGTCTGTGACGCCCTGCTCGACCGCGACCTGATCC
GTCCGGCCGGCGACAAGCGCTATGCGATCACGCCCGAGGGCCACGCCTGGTTCGAGGACCTCGGCGTCTCCAGCCAGACC
CTGCGCGGCGCGCGCGGTGTGGCGCGGCCCTGCCTGGACTGGACCGAGCGCCGCCACCACCTGGCGGGCCCGCTGGGCGT
CAAGCTGCTGGCGGCGATGACCCAGCGGGGTTGGCTGGCCCTGGAGCCCAACGGACGTGCGGTTCGCCTGACAACGAACG
GCGCTCGGGCGCTGCTGGAACGACTGAGCGTAAGCCTTGAGGACGCCGACCAGGCGGCGGCGTAA

Upstream 100 bases:

>100_bases
GCGAGGAGGCGATCATGGGCCGGCTCATGCGCCCTGGAGCGGGCGCGTTGTTACACGCGCCGATGAACCATCACGCGCCG
ATTGGGTCTAAGGTGACGCC

Downstream 100 bases:

>100_bases
CCCAGCCCCAAGAACACCCGCCGACTACTGATCCCCGGAATAGGGCACGCCCCTGACGGTCTCGTCATAGGCGGTCGGGG
GGTTGTTTTCGACATCCGTC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MDANIASPAALIGDPTRAAMLQVLQDGRAQPASALAWAAGVTAQAASNHLAKLVDGGLLAVERQGRHRYYRLASAEVAHA
IEALSVIAAPVRSLEIPRSPKARALRDARCCYGHLAGRLGVKVCDALLDRDLIRPAGDKRYAITPEGHAWFEDLGVSSQT
LRGARGVARPCLDWTERRHHLAGPLGVKLLAAMTQRGWLALEPNGRAVRLTTNGARALLERLSVSLEDADQAAA

Sequences:

>Translated_234_residues
MDANIASPAALIGDPTRAAMLQVLQDGRAQPASALAWAAGVTAQAASNHLAKLVDGGLLAVERQGRHRYYRLASAEVAHA
IEALSVIAAPVRSLEIPRSPKARALRDARCCYGHLAGRLGVKVCDALLDRDLIRPAGDKRYAITPEGHAWFEDLGVSSQT
LRGARGVARPCLDWTERRHHLAGPLGVKLLAAMTQRGWLALEPNGRAVRLTTNGARALLERLSVSLEDADQAAA
>Mature_234_residues
MDANIASPAALIGDPTRAAMLQVLQDGRAQPASALAWAAGVTAQAASNHLAKLVDGGLLAVERQGRHRYYRLASAEVAHA
IEALSVIAAPVRSLEIPRSPKARALRDARCCYGHLAGRLGVKVCDALLDRDLIRPAGDKRYAITPEGHAWFEDLGVSSQT
LRGARGVARPCLDWTERRHHLAGPLGVKLLAAMTQRGWLALEPNGRAVRLTTNGARALLERLSVSLEDADQAAA

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 24949; Mature: 24949

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDANIASPAALIGDPTRAAMLQVLQDGRAQPASALAWAAGVTAQAASNHLAKLVDGGLLA
CCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEE
VERQGRHRYYRLASAEVAHAIEALSVIAAPVRSLEIPRSPKARALRDARCCYGHLAGRLG
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
VKVCDALLDRDLIRPAGDKRYAITPEGHAWFEDLGVSSQTLRGARGVARPCLDWTERRHH
HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LAGPLGVKLLAAMTQRGWLALEPNGRAVRLTTNGARALLERLSVSLEDADQAAA
CCCHHHHHHHHHHHHCCCEEECCCCCEEEEECCHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure
MDANIASPAALIGDPTRAAMLQVLQDGRAQPASALAWAAGVTAQAASNHLAKLVDGGLLA
CCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCEEE
VERQGRHRYYRLASAEVAHAIEALSVIAAPVRSLEIPRSPKARALRDARCCYGHLAGRLG
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
VKVCDALLDRDLIRPAGDKRYAITPEGHAWFEDLGVSSQTLRGARGVARPCLDWTERRHH
HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LAGPLGVKLLAAMTQRGWLALEPNGRAVRLTTNGARALLERLSVSLEDADQAAA
CCCHHHHHHHHHHHHCCCEEECCCCCEEEEECCHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]