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The map label for this gene is ygiD [H]

Identifier: 16127188

GI number: 16127188

Start: 3181484

End: 3182254

Strand: Direct

Name: ygiD [H]

Synonym: CC_2958

Alternate gene names: 16127188

Gene position: 3181484-3182254 (Clockwise)

Preceding gene: 16127181

Following gene: 16127190

Centisome position: 79.2

GC content: 71.08

Gene sequence:

>771_bases
ATGTCCCGCATGCCCGTTCTGTTCGTCGGCCACGGTTCGCCGATGAACGCCATCGAGGACAACGCCTGGCGCCGCGACTG
GGCGCGGCTGGGGCGTGAGCTTCCCCGCCCCAAGGCCATCCTGATGGTCAGCGCCCATTGGGAGACACGCGGCGCCTCGG
CGGTCAGCGCGGCGGCCGCGCCCGAGACGATCCACGACTTCTTCGGCTTCCCCCAGGCCCTGTTCGATGTGTGCTATCCG
GCGCCCGGCGACCCGGCCCTGGCGGCGCGGGTGGCGGACTTGCTGGCGCCCGACACGGTGGTCCAGCACCCGACGCGCGG
CCTCGACCACGGCGCCTGGGGCGTGCTGGCCCCGATGTATCCGGACGCGGACATTCCCGTCGTGCAGCTGAGCCTCGATC
GCGACCGCAGCGACCGCTGGCACTACGAGGCCGGCCGGCGCCTGGCCCCGCTGCGCGACGAGGGCGTGCTGATCATCGGT
AGCGGCGACATCGTCCACAACCTGCGCGCCATCGACTTCCGCCGCCCCGAGACCCTGCCCTGGGCCGAGCGCTTCAACGA
CACCGCCAAGCAGCTGATCCTGGCCGGCGACCACGATCCCTTGATCGACTGGCGCACCCTCGGCCCCGACGCCGAGGCCT
CGATCAACAGCGCCGAACACTACCTGCCCCTGCTCTATGTGCTGGGCGCCCAGACGCCGGGCGAGCCGGTCAGCTTCTTC
ACCGACGATGTGTTTGCGGCGATCTCGATGACGGGGGTGCAGGTGGGGTGA

Upstream 100 bases:

>100_bases
GCCCGTTCGGAGGCGGAAGCCGTCACCCGAACCTCGTCTTGCGCTATGGCGTCGCGGACACTATCTGCAACTGAAGTTGT
TTCTAAAAGGCAGCATCGTC

Downstream 100 bases:

>100_bases
CTCCCTCTCCCATGGGGAGAGGGTTGGGGTGAGGGGGTACGGCGTCCGACGGAGCGCCGGCACGCCGTCAGACCGCGTAA
CCCCTCACCCTCCCACGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSRMPVLFVGHGSPMNAIEDNAWRRDWARLGRELPRPKAILMVSAHWETRGASAVSAAAAPETIHDFFGFPQALFDVCYP
APGDPALAARVADLLAPDTVVQHPTRGLDHGAWGVLAPMYPDADIPVVQLSLDRDRSDRWHYEAGRRLAPLRDEGVLIIG
SGDIVHNLRAIDFRRPETLPWAERFNDTAKQLILAGDHDPLIDWRTLGPDAEASINSAEHYLPLLYVLGAQTPGEPVSFF
TDDVFAAISMTGVQVG

Sequences:

>Translated_256_residues
MSRMPVLFVGHGSPMNAIEDNAWRRDWARLGRELPRPKAILMVSAHWETRGASAVSAAAAPETIHDFFGFPQALFDVCYP
APGDPALAARVADLLAPDTVVQHPTRGLDHGAWGVLAPMYPDADIPVVQLSLDRDRSDRWHYEAGRRLAPLRDEGVLIIG
SGDIVHNLRAIDFRRPETLPWAERFNDTAKQLILAGDHDPLIDWRTLGPDAEASINSAEHYLPLLYVLGAQTPGEPVSFF
TDDVFAAISMTGVQVG
>Mature_255_residues
SRMPVLFVGHGSPMNAIEDNAWRRDWARLGRELPRPKAILMVSAHWETRGASAVSAAAAPETIHDFFGFPQALFDVCYPA
PGDPALAARVADLLAPDTVVQHPTRGLDHGAWGVLAPMYPDADIPVVQLSLDRDRSDRWHYEAGRRLAPLRDEGVLIIGS
GDIVHNLRAIDFRRPETLPWAERFNDTAKQLILAGDHDPLIDWRTLGPDAEASINSAEHYLPLLYVLGAQTPGEPVSFFT
DDVFAAISMTGVQVG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=264, Percent_Identity=51.1363636363636, Blast_Score=254, Evalue=3e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28114; Mature: 27983

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRMPVLFVGHGSPMNAIEDNAWRRDWARLGRELPRPKAILMVSAHWETRGASAVSAAAA
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCC
PETIHDFFGFPQALFDVCYPAPGDPALAARVADLLAPDTVVQHPTRGLDHGAWGVLAPMY
HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEECCCC
PDADIPVVQLSLDRDRSDRWHYEAGRRLAPLRDEGVLIIGSGDIVHNLRAIDFRRPETLP
CCCCCCEEEEEECCCCCCCCHHHCCCEECCCCCCCEEEEECCHHHHHHEEECCCCCCCCC
WAERFNDTAKQLILAGDHDPLIDWRTLGPDAEASINSAEHYLPLLYVLGAQTPGEPVSFF
HHHHHHHHHHHEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHEECCCCCCCCHHHH
TDDVFAAISMTGVQVG
HHHHHHHHHHCCEECC
>Mature Secondary Structure 
SRMPVLFVGHGSPMNAIEDNAWRRDWARLGRELPRPKAILMVSAHWETRGASAVSAAAA
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHCC
PETIHDFFGFPQALFDVCYPAPGDPALAARVADLLAPDTVVQHPTRGLDHGAWGVLAPMY
HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEECCCC
PDADIPVVQLSLDRDRSDRWHYEAGRRLAPLRDEGVLIIGSGDIVHNLRAIDFRRPETLP
CCCCCCEEEEEECCCCCCCCHHHCCCEECCCCCCCEEEEECCHHHHHHEEECCCCCCCCC
WAERFNDTAKQLILAGDHDPLIDWRTLGPDAEASINSAEHYLPLLYVLGAQTPGEPVSFF
HHHHHHHHHHHEEEECCCCCCEEEEECCCCCCCCCCCHHHHHHHHHEECCCCCCCCHHHH
TDDVFAAISMTGVQVG
HHHHHHHHHHCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]