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The map label for this gene is pal [C]

Identifier: 16127077

GI number: 16127077

Start: 3072719

End: 3073294

Strand: Direct

Name: pal [C]

Synonym: CC_2845

Alternate gene names: 16127077

Gene position: 3072719-3073294 (Clockwise)

Preceding gene: 16127076

Following gene: 16127078

Centisome position: 76.49

GC content: 66.32

Gene sequence:

>576_bases
ATGAAACCCCTCCTCATCACGCTCACTGCCGTGCTGATGGCGGCGACCCTTCCAAGTTCCGCAAGGGCCGAGACCGGGTT
TCAGAAGCTGGGCCGATGCTTCACTGACCTAGTCGCCTGCTTAACGCCGCCGCGACGACCGCCGCCAGCGCCGCCGCCCG
CACCGGATAACATCCCGCCGCCGCAACCCCTTCCACCAGCTCCGCTGCCTCCGCCGCCTCCGGCGCCTCCACCGGCGTAT
GAGGCGCGCGAGTTCATCGTGTACTTCCCGTTCGACAGCGCCGTGTTGGACGAATCTGGCCAGATCGTCCTGGTCGCAGC
AGCCAACTACGCCAAGTCTGGCAACGCGACGCGGATCGTGGTTGTCGGCCATGCCGACACCGCAGGACCCGACGCCTATA
ACATCGGGCTCTCCGAACGCCGCGCCAAGGCCACTGCCGACACGCTGGTCAATCTGGGGATCTCGGCCTCGACCATTGCC
GTGGATTGGAAGGGCGAAAGCGCACCCGCCGTGGCCACCGGCGATGGCGTATCCGAGCCGCTGAACCGTCGCGTGACGAT
CAGCCCCAACTTCTGA

Upstream 100 bases:

>100_bases
TGGCGCGGTGGCGGGTGGCGGTCGCGTCGATGGGCGTGTCGCTGTTCATCATCATGGTGCAGCTGGTCGCGCTGGCGGGC
CAGATTGAAAGGCAAAAGGT

Downstream 100 bases:

>100_bases
CGCCCGAACTCTGCGCGCAGGTCCAGCGGTGAAAGCCCCTGGACCTGCGACCAAGCGCCTCCTTTCTACGAAATTAACCG
TCCGAAAAGAGTGGCCACCC

Product: OmpA family protein

Products: NA

Alternate protein names: Omp40; PG33 [H]

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKPLLITLTAVLMAATLPSSARAETGFQKLGRCFTDLVACLTPPRRPPPAPPPAPDNIPPPQPLPPAPLPPPPPAPPPAY
EAREFIVYFPFDSAVLDESGQIVLVAAANYAKSGNATRIVVVGHADTAGPDAYNIGLSERRAKATADTLVNLGISASTIA
VDWKGESAPAVATGDGVSEPLNRRVTISPNF

Sequences:

>Translated_191_residues
MKPLLITLTAVLMAATLPSSARAETGFQKLGRCFTDLVACLTPPRRPPPAPPPAPDNIPPPQPLPPAPLPPPPPAPPPAY
EAREFIVYFPFDSAVLDESGQIVLVAAANYAKSGNATRIVVVGHADTAGPDAYNIGLSERRAKATADTLVNLGISASTIA
VDWKGESAPAVATGDGVSEPLNRRVTISPNF
>Mature_191_residues
MKPLLITLTAVLMAATLPSSARAETGFQKLGRCFTDLVACLTPPRRPPPAPPPAPDNIPPPQPLPPAPLPPPPPAPPPAY
EAREFIVYFPFDSAVLDESGQIVLVAAANYAKSGNATRIVVVGHADTAGPDAYNIGLSERRAKATADTLVNLGISASTIA
VDWKGESAPAVATGDGVSEPLNRRVTISPNF

Specific function: May have porin activity and function in peptidoglycan binding [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=37.2549019607843, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19860; Mature: 19860

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLLITLTAVLMAATLPSSARAETGFQKLGRCFTDLVACLTPPRRPPPAPPPAPDNIPP
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PQPLPPAPLPPPPPAPPPAYEAREFIVYFPFDSAVLDESGQIVLVAAANYAKSGNATRIV
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCEEEEEECCCCCCCCCEEEE
VVGHADTAGPDAYNIGLSERRAKATADTLVNLGISASTIAVDWKGESAPAVATGDGVSEP
EEECCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCC
LNRRVTISPNF
CCCEEEECCCC
>Mature Secondary Structure
MKPLLITLTAVLMAATLPSSARAETGFQKLGRCFTDLVACLTPPRRPPPAPPPAPDNIPP
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PQPLPPAPLPPPPPAPPPAYEAREFIVYFPFDSAVLDESGQIVLVAAANYAKSGNATRIV
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCEEEEEECCCCCCCCCEEEE
VVGHADTAGPDAYNIGLSERRAKATADTLVNLGISASTIAVDWKGESAPAVATGDGVSEP
EEECCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCCC
LNRRVTISPNF
CCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11457538; 12949112; 11532011 [H]