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The map label for this gene is rutA

Identifier: 16127030

GI number: 16127030

Start: 3010206

End: 3011270

Strand: Direct

Name: rutA

Synonym: CC_2798

Alternate gene names: 16127030

Gene position: 3010206-3011270 (Clockwise)

Preceding gene: 16127029

Following gene: 16127032

Centisome position: 74.94

GC content: 64.79

Gene sequence:

>1065_bases
ATGCAGGTCGGCGTCTTCATCCCCATCGGCAACAACGGCTGGCTCATCTCCGAGACCTCGCCGCAGTACATGCCCAGCTT
CGAGCTGAACAAGGAGATCACCCAGAAGGCCGAGAAGTACGGCTTCGACTTCGCCCTCTCGATGATCAAGCTGCGCGGGT
TCGGCGGCAAGACGGAGTTCTGGGAGCACAATCTGGAGAGCTTCACCCTGATGGCGGGCCTCGCCGCGGTGACCTCCAAG
ATCAAGATCTTCGCCACCGTCGCCACCCTGACCATCCCGCCGGCCATCGTGGCGCGCATGGCCTCGACCATCGACTCGAT
CGCCCCCGGGCGCTTTGGCGTGAACCTGGTCACCGGCTGGCAAAAGGCCGAGTATTCGCAGATGGGCCTCTGGCCCGGCG
AGGCGCACTATACCGACCGCTACAACTATCTGGCTGAATACACGACCGTACTGAAGGACTTGCTGGAGACCGGCGTTTCG
GACTTCAAGGGCAAGTACTTCACCATGGACGACTGCCGGGTCAGCCCGCACCCCAAGGAGACCAAGCTGATCTGCGCCGG
CTCGTCCGACGAGGGCCTGGCCTTCACGGCCCAGTACGCCGACTACAGCTTCGCCCTGGGCAAGGGGACCAACACCCCGA
CCGCCTTCGCCTCGGTCAATCGCCGCCTGGAGGCCGCCGCCGCCAAGACCGGCCGCGACGTTCAGTCGTTCATCCTGTTC
ATGGTGATCGCCGACGAGACCGACGAGAAGGCGATGGCCAAGTGGCAAAAGTACCGCGACGGCGCCGATCAGGAGGCCCT
GGCCTGGCTCACGCAACAGGCGGCCCCCAACGCCAAGGCCGGCGCGACCACCAACACCCAGCAGCTGGCCGCCCCGGAAT
CGGCGGTGAACCTGAACATGGGCACGCTGGTGGGCAGCTATGAGAGCATCGCCCGGATGATGGACGAGATCGCGCAGGTG
CCGGGCACCGCCGGCGTGCTGCTGACCTTTGATGACTTCGTCCAGGGGGTGGAGGATTTCGGGACGAAGATCCAGCCGCT
GATGAAGAGCCGGAAGGGCGGCTAG

Upstream 100 bases:

>100_bases
AGTGCTGCTGCCCCTGCCGCTTCCCCCTCCGTCGTCTCTTCGAGCCGACACCTCCCCCGCTGGGGGGAGGATTTCCCATT
TTCAGAAGGTCCATAATCCC

Downstream 100 bases:

>100_bases
TTGCGAGCTCTCCTCCCCCATCGGGGGAGGGGGACCGCCGAACGGCGGTGGAGGGGCCAGCCGAACGGTTCAGCCTCTTC
TTGTCGGGAGCAGAACGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MQVGVFIPIGNNGWLISETSPQYMPSFELNKEITQKAEKYGFDFALSMIKLRGFGGKTEFWEHNLESFTLMAGLAAVTSK
IKIFATVATLTIPPAIVARMASTIDSIAPGRFGVNLVTGWQKAEYSQMGLWPGEAHYTDRYNYLAEYTTVLKDLLETGVS
DFKGKYFTMDDCRVSPHPKETKLICAGSSDEGLAFTAQYADYSFALGKGTNTPTAFASVNRRLEAAAAKTGRDVQSFILF
MVIADETDEKAMAKWQKYRDGADQEALAWLTQQAAPNAKAGATTNTQQLAAPESAVNLNMGTLVGSYESIARMMDEIAQV
PGTAGVLLTFDDFVQGVEDFGTKIQPLMKSRKGG

Sequences:

>Translated_354_residues
MQVGVFIPIGNNGWLISETSPQYMPSFELNKEITQKAEKYGFDFALSMIKLRGFGGKTEFWEHNLESFTLMAGLAAVTSK
IKIFATVATLTIPPAIVARMASTIDSIAPGRFGVNLVTGWQKAEYSQMGLWPGEAHYTDRYNYLAEYTTVLKDLLETGVS
DFKGKYFTMDDCRVSPHPKETKLICAGSSDEGLAFTAQYADYSFALGKGTNTPTAFASVNRRLEAAAAKTGRDVQSFILF
MVIADETDEKAMAKWQKYRDGADQEALAWLTQQAAPNAKAGATTNTQQLAAPESAVNLNMGTLVGSYESIARMMDEIAQV
PGTAGVLLTFDDFVQGVEDFGTKIQPLMKSRKGG
>Mature_354_residues
MQVGVFIPIGNNGWLISETSPQYMPSFELNKEITQKAEKYGFDFALSMIKLRGFGGKTEFWEHNLESFTLMAGLAAVTSK
IKIFATVATLTIPPAIVARMASTIDSIAPGRFGVNLVTGWQKAEYSQMGLWPGEAHYTDRYNYLAEYTTVLKDLLETGVS
DFKGKYFTMDDCRVSPHPKETKLICAGSSDEGLAFTAQYADYSFALGKGTNTPTAFASVNRRLEAAAAKTGRDVQSFILF
MVIADETDEKAMAKWQKYRDGADQEALAWLTQQAAPNAKAGATTNTQQLAAPESAVNLNMGTLVGSYESIARMMDEIAQV
PGTAGVLLTFDDFVQGVEDFGTKIQPLMKSRKGG

Specific function: Catalyzes the pyrimidine ring opening between N-3 and C- 4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product wh

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ntaA/snaA/soxA(dszA) monooxygenase family. RutA subfamily

Homologues:

Organism=Escherichia coli, GI1787247, Length=352, Percent_Identity=69.3181818181818, Blast_Score=533, Evalue=1e-153,
Organism=Escherichia coli, GI1787166, Length=209, Percent_Identity=26.7942583732057, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTA_CAUCN (B8H1Q4)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002518261.1
- ProteinModelPortal:   B8H1Q4
- GeneID:   7331318
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_02888
- ProtClustDB:   CLSK879925
- HAMAP:   MF_01699
- InterPro:   IPR011251
- InterPro:   IPR019914
- InterPro:   IPR016048
- Gene3D:   G3DSA:3.20.20.30
- TIGRFAMs:   TIGR03612

Pfam domain/function: PF00296 Bac_luciferase; SSF51679 Luciferase_like

EC number: NA

Molecular weight: Translated: 38647; Mature: 38647

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: BINDING 115-115 BINDING 124-124 BINDING 189-189

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVGVFIPIGNNGWLISETSPQYMPSFELNKEITQKAEKYGFDFALSMIKLRGFGGKTEF
CCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHH
WEHNLESFTLMAGLAAVTSKIKIFATVATLTIPPAIVARMASTIDSIAPGRFGVNLVTGW
HHCCHHHHHHHHHHHHHHHHHHHEEEHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECC
QKAEYSQMGLWPGEAHYTDRYNYLAEYTTVLKDLLETGVSDFKGKYFTMDDCRVSPHPKE
CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCC
TKLICAGSSDEGLAFTAQYADYSFALGKGTNTPTAFASVNRRLEAAAAKTGRDVQSFILF
CEEEEECCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHEE
MVIADETDEKAMAKWQKYRDGADQEALAWLTQQAAPNAKAGATTNTQQLAAPESAVNLNM
EEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHCCCH
GTLVGSYESIARMMDEIAQVPGTAGVLLTFDDFVQGVEDFGTKIQPLMKSRKGG
HHHHCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHCCCC
>Mature Secondary Structure
MQVGVFIPIGNNGWLISETSPQYMPSFELNKEITQKAEKYGFDFALSMIKLRGFGGKTEF
CCEEEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHH
WEHNLESFTLMAGLAAVTSKIKIFATVATLTIPPAIVARMASTIDSIAPGRFGVNLVTGW
HHCCHHHHHHHHHHHHHHHHHHHEEEHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECC
QKAEYSQMGLWPGEAHYTDRYNYLAEYTTVLKDLLETGVSDFKGKYFTMDDCRVSPHPKE
CCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCC
TKLICAGSSDEGLAFTAQYADYSFALGKGTNTPTAFASVNRRLEAAAAKTGRDVQSFILF
CEEEEECCCCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHEE
MVIADETDEKAMAKWQKYRDGADQEALAWLTQQAAPNAKAGATTNTQQLAAPESAVNLNM
EEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHCCCH
GTLVGSYESIARMMDEIAQVPGTAGVLLTFDDFVQGVEDFGTKIQPLMKSRKGG
HHHHCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA