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The map label for this gene is yagA [H]

Identifier: 16126962

GI number: 16126962

Start: 2944554

End: 2945534

Strand: Direct

Name: yagA [H]

Synonym: CC_2729

Alternate gene names: 16126962

Gene position: 2944554-2945534 (Clockwise)

Preceding gene: 16126961

Following gene: 16126967

Centisome position: 73.3

GC content: 63.1

Gene sequence:

>981_bases
ATGAGATATCCCGCTTGCGAAAAGATCGAGATCATCCGCCTGGTCGAGCAATCGACCCTGCCCGTGCGCAGGACGCTGGC
CCAGATCGGCGTGCCCCGCGCCACCTTCTATCGCTGGTATGATCTTTATCAGACCGGCGGTCCGGAGGCGCTGGAAGACC
GCCCGGCGCGCCCAAGCCGGGTGTGGAACCGCATCCCCGAGGATGTTCGCGCCGCGATCCTGGAGATGGCCCTGGAGCAC
TCGGAGTTGAGCCCGCGGGAGCTGGCGGTGCGCTTCACCGACAGTCAGGGCTACTTCGTCTCGGAAGCCAGTGTTTACAG
GCTTTTGAAGAGCCATGACCTGATCACCAGCCCGGCCTTCATCGTCATGAAGGCCGCCAAGGCGTTCACCGACAAGACCA
CGGCGCCCAACCAGATGTGGCAGACTGATTTTACCTACTTCAAGATCATCGGATGGGGCTGGGTCTATCTGTCGACGATC
CTGGACGACTTCTCGCGCTACGTCATCGCCTGGAAGCTGTGCACGACCATGAAGGCGGGGGACGTCACCGATACGCTGGA
ACTGGCGCTCAGCGCGTCGGGCTGCGATCAGGTCAGCGTCCGGCACAAGCCGCGTCTGCTGTCGGACAATGGCTCCAGTT
ACATCTCGGGCGAACTGGCCGACTGGCTGGGGAAGCAGGAGATGAAACACGTCCGGGGCGCACCCTACCATCCCCAGACC
CAGGGCAAGATCGAGCGCTGGCATCAGACCCTGAAGAACCGCATCCTGCTGGAGAACTACTTCCTGCCCGGCGACCTGGA
GGCCCAGATCGGCGCCTTCATCGAGCACTACAACCACGCCCGCTATCACGAGAGCCTGGAGAATGTAACGCCGGCCGACG
CCTACTTCGGCCGAGCCGCCGACATCCTGCGCCGCCGCGCCAGCGTCAAGCGACAGACCCTTGAACATCGGCGCTTGCAG
CACCGCAAAATCGCCGCCTAG

Upstream 100 bases:

>100_bases
TGCGCCGAGAATCGACGGCCCTCAAAGAGGTGGTGGCCGAACAGGCGCTTGAAATCCGCCTGCTCAAAAAAAGCATGATC
GCCGATGGGGGCGACGGGGA

Downstream 100 bases:

>100_bases
ATATCAAACCCAGACGAGGCCAACCCTCCACTAAATCCGCAGCCCGGCTGTCTCAAAACTTCTGACGACGTACAGTCGAC
AGACTCTTGATCTGGCTGGC

Product: ISCc3 transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRYPACEKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPEALEDRPARPSRVWNRIPEDVRAAILEMALEH
SELSPRELAVRFTDSQGYFVSEASVYRLLKSHDLITSPAFIVMKAAKAFTDKTTAPNQMWQTDFTYFKIIGWGWVYLSTI
LDDFSRYVIAWKLCTTMKAGDVTDTLELALSASGCDQVSVRHKPRLLSDNGSSYISGELADWLGKQEMKHVRGAPYHPQT
QGKIERWHQTLKNRILLENYFLPGDLEAQIGAFIEHYNHARYHESLENVTPADAYFGRAADILRRRASVKRQTLEHRRLQ
HRKIAA

Sequences:

>Translated_326_residues
MRYPACEKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPEALEDRPARPSRVWNRIPEDVRAAILEMALEH
SELSPRELAVRFTDSQGYFVSEASVYRLLKSHDLITSPAFIVMKAAKAFTDKTTAPNQMWQTDFTYFKIIGWGWVYLSTI
LDDFSRYVIAWKLCTTMKAGDVTDTLELALSASGCDQVSVRHKPRLLSDNGSSYISGELADWLGKQEMKHVRGAPYHPQT
QGKIERWHQTLKNRILLENYFLPGDLEAQIGAFIEHYNHARYHESLENVTPADAYFGRAADILRRRASVKRQTLEHRRLQ
HRKIAA
>Mature_326_residues
MRYPACEKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPEALEDRPARPSRVWNRIPEDVRAAILEMALEH
SELSPRELAVRFTDSQGYFVSEASVYRLLKSHDLITSPAFIVMKAAKAFTDKTTAPNQMWQTDFTYFKIIGWGWVYLSTI
LDDFSRYVIAWKLCTTMKAGDVTDTLELALSASGCDQVSVRHKPRLLSDNGSSYISGELADWLGKQEMKHVRGAPYHPQT
QGKIERWHQTLKNRILLENYFLPGDLEAQIGAFIEHYNHARYHESLENVTPADAYFGRAADILRRRASVKRQTLEHRRLQ
HRKIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=295, Percent_Identity=28.8135593220339, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 37572; Mature: 37572

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPACEKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPEALEDRPARPSR
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHH
VWNRIPEDVRAAILEMALEHSELSPRELAVRFTDSQGYFVSEASVYRLLKSHDLITSPAF
HHHHCCHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCHH
IVMKAAKAFTDKTTAPNQMWQTDFTYFKIIGWGWVYLSTILDDFSRYVIAWKLCTTMKAG
HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DVTDTLELALSASGCDQVSVRHKPRLLSDNGSSYISGELADWLGKQEMKHVRGAPYHPQT
CCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEECCHHHHHHCHHHHHHHCCCCCCCCC
QGKIERWHQTLKNRILLENYFLPGDLEAQIGAFIEHYNHARYHESLENVTPADAYFGRAA
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DILRRRASVKRQTLEHRRLQHRKIAA
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYPACEKIEIIRLVEQSTLPVRRTLAQIGVPRATFYRWYDLYQTGGPEALEDRPARPSR
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCCCCCHHH
VWNRIPEDVRAAILEMALEHSELSPRELAVRFTDSQGYFVSEASVYRLLKSHDLITSPAF
HHHHCCHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCHH
IVMKAAKAFTDKTTAPNQMWQTDFTYFKIIGWGWVYLSTILDDFSRYVIAWKLCTTMKAG
HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DVTDTLELALSASGCDQVSVRHKPRLLSDNGSSYISGELADWLGKQEMKHVRGAPYHPQT
CCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCEECCHHHHHHCHHHHHHHCCCCCCCCC
QGKIERWHQTLKNRILLENYFLPGDLEAQIGAFIEHYNHARYHESLENVTPADAYFGRAA
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
DILRRRASVKRQTLEHRRLQHRKIAA
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]