Click here to switch to the map view.

The map label for this gene is ytfA [C]

Identifier: 16126845

GI number: 16126845

Start: 2818574

End: 2819266

Strand: Direct

Name: ytfA [C]

Synonym: CC_2608

Alternate gene names: 16126845

Gene position: 2818574-2819266 (Clockwise)

Preceding gene: 16126844

Following gene: 16126849

Centisome position: 70.17

GC content: 67.1

Gene sequence:

>693_bases
GTGACCGACGCCGTCCTGGACGCGCAAGCCGACGCCGCCCTCGGGTCCGCAGACGGCGCGCCGCGCAAGCGCAACGCCGA
GCGCACCCGCAAGGCGATCCTCGCCGCGGCCCTCAAGGAGTTCGCCCAAGCCGGCTTCGCCGGGGCCCGGATCGAGAAGA
TCGTCAAGGCCGCCAAGTGCAACATCCGGATGCTCTACCACTACTTCGGGGACAAGAAGGGCCTGTACATGGCCGTCCTC
GAAAGCGCCTATATGGACCTGCGGGCCCGCGAGGCCGAGCTGAAGATCGACTTTGAAAAGCCGCTGGACGGCTTCCTCGA
GCTGCAGCGCTTCACCTTCGACTATTTCGAGAAGAACCCGCGCTTTGAGGGCCTGCTGCGCAACGAGAACCTGCAGCACG
GCAAGTTCGCCGCCCAGTCGCGGGTGGTCACCGAGACGGCCTTCCCGCTGCGCCGTACGATCGAACGCCTGATCGAGAGC
GGCCAGCGCCAGGGGATTTTCGGGCCCGACCTCGACCCGGTGCAGATCTATGTGACGATCGCGGCCATGAGCCGCTTCCA
CCTGGCCAACGGCTATTCGCTGTCGGCGACGCTGAACACCGACATGAGCGCCCCCGAATGGCGCCGGGCGCGGCTGGATC
ACGCCCTGGCGCTGCTGGAAGGCTATCTGACGCGCGGCGCGCCCAAGCGCTAA

Upstream 100 bases:

>100_bases
CAGTGCTCTCGACCAGCATGCCCCTTGGCAACGAGACCGGCATGACCGATGAGGAGCGCGCCCAGCTGGGCGCCTGGATC
AAACAGGGAGCCAACATCCC

Downstream 100 bases:

>100_bases
TTGGCGGCGGGGGCCTTCAGCGGCGGACCGCTGAACTCGGCCTCGATCTCGACCTGCACCTCGTCGCCGACGCCCATGGT
CGCGCCCGGCGCCGGAAGAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTDAVLDAQADAALGSADGAPRKRNAERTRKAILAAALKEFAQAGFAGARIEKIVKAAKCNIRMLYHYFGDKKGLYMAVL
ESAYMDLRAREAELKIDFEKPLDGFLELQRFTFDYFEKNPRFEGLLRNENLQHGKFAAQSRVVTETAFPLRRTIERLIES
GQRQGIFGPDLDPVQIYVTIAAMSRFHLANGYSLSATLNTDMSAPEWRRARLDHALALLEGYLTRGAPKR

Sequences:

>Translated_230_residues
MTDAVLDAQADAALGSADGAPRKRNAERTRKAILAAALKEFAQAGFAGARIEKIVKAAKCNIRMLYHYFGDKKGLYMAVL
ESAYMDLRAREAELKIDFEKPLDGFLELQRFTFDYFEKNPRFEGLLRNENLQHGKFAAQSRVVTETAFPLRRTIERLIES
GQRQGIFGPDLDPVQIYVTIAAMSRFHLANGYSLSATLNTDMSAPEWRRARLDHALALLEGYLTRGAPKR
>Mature_229_residues
TDAVLDAQADAALGSADGAPRKRNAERTRKAILAAALKEFAQAGFAGARIEKIVKAAKCNIRMLYHYFGDKKGLYMAVLE
SAYMDLRAREAELKIDFEKPLDGFLELQRFTFDYFEKNPRFEGLLRNENLQHGKFAAQSRVVTETAFPLRRTIERLIESG
QRQGIFGPDLDPVQIYVTIAAMSRFHLANGYSLSATLNTDMSAPEWRRARLDHALALLEGYLTRGAPKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25875; Mature: 25744

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAVLDAQADAALGSADGAPRKRNAERTRKAILAAALKEFAQAGFAGARIEKIVKAAKC
CCCCHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NIRMLYHYFGDKKGLYMAVLESAYMDLRAREAELKIDFEKPLDGFLELQRFTFDYFEKNP
CCEEEEEHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
RFEGLLRNENLQHGKFAAQSRVVTETAFPLRRTIERLIESGQRQGIFGPDLDPVQIYVTI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEHHH
AAMSRFHLANGYSLSATLNTDMSAPEWRRARLDHALALLEGYLTRGAPKR
HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDAVLDAQADAALGSADGAPRKRNAERTRKAILAAALKEFAQAGFAGARIEKIVKAAKC
CCCHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
NIRMLYHYFGDKKGLYMAVLESAYMDLRAREAELKIDFEKPLDGFLELQRFTFDYFEKNP
CCEEEEEHHCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
RFEGLLRNENLQHGKFAAQSRVVTETAFPLRRTIERLIESGQRQGIFGPDLDPVQIYVTI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEHHH
AAMSRFHLANGYSLSATLNTDMSAPEWRRARLDHALALLEGYLTRGAPKR
HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA