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The map label for this gene is yqgF [C]

Identifier: 16126678

GI number: 16126678

Start: 2645135

End: 2645605

Strand: Direct

Name: yqgF [C]

Synonym: CC_2439

Alternate gene names: 16126678

Gene position: 2645135-2645605 (Clockwise)

Preceding gene: 16126674

Following gene: 16126679

Centisome position: 65.85

GC content: 65.82

Gene sequence:

>471_bases
ATGCCCGTTCTCGATATCGAAGACTTCGCCGACGCCCTCCCCCAGTACGCCGCCGTCGTGGGTCTGGACCCGGGAGAGAA
GACCATTGGGGTAGCCGTCTCCGACGTCACGCGCACCGTCGCCAGCCCTCTGGCCCTGATCGAGAAGACCAAGTTCAGCA
AGGACGCCGAGCAGCTTTTCAAGCTGATGGACAGTCGCGGCGCCGTCGCAATCGTCATCGGCCTGCCGATGAACATGGAC
GGCACCGAAGGCGTGCGTTGCCAGTCCAACCGGGCATTGGGCCGCAATCTGCTGCGCCTGAAGCCCGACCTGCCGATCAC
CTTCTGGGACGAGCGGCTATCGACGGCGGCGGTCACCCGGGTGCTGATCGACGAGCACGACATCTCGCGCAAGCGCCGGG
ACGAGGTCGTCGACAAGATGGCCGCCGGTTGGATCCTGCAGGGCGCGCTGGAGCGGCTTCGCGGCCTTTGA

Upstream 100 bases:

>100_bases
AACCTCTCGTTCAGTCTCACCCTGAGCCCCTCGAAGGGCGAGGCTGACGCACGGCGCGACGCCCTTCGACAAGCCCAGGG
TGAGGACGTAAAAGACCGTC

Downstream 100 bases:

>100_bases
GACCATCGCCGTCACTGAACTTTCGCCCCGGGCGAGAAAGTCAGGGCTTTGCGGCCGCGAACCGGCTTGGTTAATGTCGG
CGAATTCGCGAACTCGGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLFKLMDSRGAVAIVIGLPMNMD
GTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTRVLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL

Sequences:

>Translated_156_residues
MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLFKLMDSRGAVAIVIGLPMNMD
GTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTRVLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL
>Mature_155_residues
PVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLFKLMDSRGAVAIVIGLPMNMDG
TEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTRVLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CAUCN (B8GZJ7)

Other databases:

- EMBL:   CP001340
- RefSeq:   YP_002517894.1
- ProteinModelPortal:   B8GZJ7
- SMR:   B8GZJ7
- GeneID:   7330674
- GenomeReviews:   CP001340_GR
- KEGG:   ccs:CCNA_02521
- OMA:   VLILQNY
- ProtClustDB:   CLSK890978
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17142; Mature: 17011

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF
CCCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR
HHHHCCCCEEEEEECCCCCCCCCCCEECCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHH
VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVLDIEDFADALPQYAAVVGLDPGEKTIGVAVSDVTRTVASPLALIEKTKFSKDAEQLF
CCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KLMDSRGAVAIVIGLPMNMDGTEGVRCQSNRALGRNLLRLKPDLPITFWDERLSTAAVTR
HHHHCCCCEEEEEECCCCCCCCCCCEECCCHHHHHHHHHCCCCCCEEEHHHHHHHHHHHH
VLIDEHDISRKRRDEVVDKMAAGWILQGALERLRGL
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA