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The map label for this gene is lpsJ [H]

Identifier: 16126645

GI number: 16126645

Start: 2611140

End: 2611787

Strand: Direct

Name: lpsJ [H]

Synonym: CC_2406

Alternate gene names: 16126645

Gene position: 2611140-2611787 (Clockwise)

Preceding gene: 16126644

Following gene: 16126646

Centisome position: 65.0

GC content: 64.97

Gene sequence:

>648_bases
ATGGCCTGGACCCGCGACGAGATGGCGGCTCGCGCCGCCCGCGAGCTGAAGAACGGCTTCTACGTCAACCTCGGCATCGG
CATCCCGACCCTGGTCGCCAACCACATTCCCGAGGGCGTCCACGTCACGCTGCAGAGCGAGAACGGCATGCTGGGCATGG
GTCCCTTCCCCTACGAGGACGAGGCTGATCCCGACCTGATCAACGCCGGTAAGCAGACCATCACAAAGCTGCCGACCTCC
AGCTTCTTCGACAGCGCCCAGAGCTTCGCCATGATCCGGGGCGGCCACATCGACTTGACGGTGCTGGGCGCGATGGAAGT
GGCCCAGAACGGCGACATCGCCAACTGGACGATCCCTGGCAAGATGGTGAAAGGCATGGGCGGCGCCATGGACCTGGTGG
CCGGCGTCAAGCGCGTCATCGTCGTGATGGACCACGCAAACAAGGCCGGCCAGAGCAAGGTCCTCAAGCGCTGCGCCCTG
CCCCTGACCGGCGCGGCCTGCGTCGACATGGTCATCACCGACCTCTGCGTCTTCGACCTCGACCGCAAGGGGGGCGGCCT
CACTTTGATCGAGCTGGCTCCTGAGGTCACCCTCGACGAAGTTAAGGCCAAGACGGCAGCCGATTTCGATGCGGGAGCCT
TCGCATGA

Upstream 100 bases:

>100_bases
GCATCTATGTCGACCGCATCGTCAAGTCGACGATCAATGAAAAGCGCATCGAGAAGCTGACCACCCGCCCACGAGAGATC
CACGCTGGGGAGACCGTATA

Downstream 100 bases:

>100_bases
CCGCCGCCTATATCTGTGACGGGATCCGCACCCCGATCGGTCGCTATGGTGGGTCGCTCTCAAAGGTGCGCGCCGACGAT
CTGGCGGCGATCCCGCTGAA

Product: 3-oxoadipate CoA-transferase subunit beta

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MAWTRDEMAARAARELKNGFYVNLGIGIPTLVANHIPEGVHVTLQSENGMLGMGPFPYEDEADPDLINAGKQTITKLPTS
SFFDSAQSFAMIRGGHIDLTVLGAMEVAQNGDIANWTIPGKMVKGMGGAMDLVAGVKRVIVVMDHANKAGQSKVLKRCAL
PLTGAACVDMVITDLCVFDLDRKGGGLTLIELAPEVTLDEVKAKTAADFDAGAFA

Sequences:

>Translated_215_residues
MAWTRDEMAARAARELKNGFYVNLGIGIPTLVANHIPEGVHVTLQSENGMLGMGPFPYEDEADPDLINAGKQTITKLPTS
SFFDSAQSFAMIRGGHIDLTVLGAMEVAQNGDIANWTIPGKMVKGMGGAMDLVAGVKRVIVVMDHANKAGQSKVLKRCAL
PLTGAACVDMVITDLCVFDLDRKGGGLTLIELAPEVTLDEVKAKTAADFDAGAFA
>Mature_214_residues
AWTRDEMAARAARELKNGFYVNLGIGIPTLVANHIPEGVHVTLQSENGMLGMGPFPYEDEADPDLINAGKQTITKLPTSS
FFDSAQSFAMIRGGHIDLTVLGAMEVAQNGDIANWTIPGKMVKGMGGAMDLVAGVKRVIVVMDHANKAGQSKVLKRCALP
LTGAACVDMVITDLCVFDLDRKGGGLTLIELAPEVTLDEVKAKTAADFDAGAFA

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=206, Percent_Identity=58.252427184466, Blast_Score=251, Evalue=4e-67,
Organism=Homo sapiens, GI11545841, Length=206, Percent_Identity=57.2815533980583, Blast_Score=234, Evalue=6e-62,
Organism=Escherichia coli, GI1788552, Length=209, Percent_Identity=52.1531100478469, Blast_Score=219, Evalue=8e-59,
Organism=Caenorhabditis elegans, GI17531517, Length=208, Percent_Identity=56.7307692307692, Blast_Score=238, Evalue=1e-63,
Organism=Drosophila melanogaster, GI21358325, Length=206, Percent_Identity=57.2815533980583, Blast_Score=248, Evalue=2e-66,
Organism=Drosophila melanogaster, GI24655794, Length=206, Percent_Identity=57.2815533980583, Blast_Score=248, Evalue=2e-66,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22748; Mature: 22616

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTRDEMAARAARELKNGFYVNLGIGIPTLVANHIPEGVHVTLQSENGMLGMGPFPYED
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
EADPDLINAGKQTITKLPTSSFFDSAQSFAMIRGGHIDLTVLGAMEVAQNGDIANWTIPG
CCCCHHHHCCHHHHHHCCCHHHHHHHHHHHHEECCCEEEEEEEHHHHHCCCCEEEEECCH
KMVKGMGGAMDLVAGVKRVIVVMDHANKAGQSKVLKRCALPLTGAACVDMVITDLCVFDL
HHHHCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
DRKGGGLTLIELAPEVTLDEVKAKTAADFDAGAFA
CCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AWTRDEMAARAARELKNGFYVNLGIGIPTLVANHIPEGVHVTLQSENGMLGMGPFPYED
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
EADPDLINAGKQTITKLPTSSFFDSAQSFAMIRGGHIDLTVLGAMEVAQNGDIANWTIPG
CCCCHHHHCCHHHHHHCCCHHHHHHHHHHHHEECCCEEEEEEEHHHHHCCCCEEEEECCH
KMVKGMGGAMDLVAGVKRVIVVMDHANKAGQSKVLKRCALPLTGAACVDMVITDLCVFDL
HHHHCCCCHHHHHHHHHHEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
DRKGGGLTLIELAPEVTLDEVKAKTAADFDAGAFA
CCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]