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The map label for this gene is flgF

Identifier: 16126302

GI number: 16126302

Start: 2274796

End: 2275533

Strand: Direct

Name: flgF

Synonym: CC_2063

Alternate gene names: 16126302

Gene position: 2274796-2275533 (Clockwise)

Preceding gene: 16126291

Following gene: 16126303

Centisome position: 56.63

GC content: 64.77

Gene sequence:

>738_bases
ATGGACAACGCGCTTTATGTCGGCCTTTCGCGTCAGATGACGCTGCGCCGCGAGCTCGACATCGTGGCCAACAACATCGC
CAACGCCAACACCACGGGCTTCAAGGTCGAAGACCTGATGGTCCGCACCGAGCAGGCCAAGCCTGCCAAGACCCTGGACG
GCTCCTCGCCGGTCAAGTTCGTCATGGACACCGGCGTAGCCCGCAATTTCACCCAGGGCCCGATGACCAAGACGGGCGGC
GACTACGACCTGGCCATCAACGGCATGGGCTTCTTCAAGGTCCAGGCCAATGGCGGTGAGCGCTACACGCGCGACGGCCG
TTTCACCACCAATCCGGAAGGCATCCTCGTCACCCAGGCCGGCGCGCCTGTGCTGGACGACGGCGGCGGACAGATCACGA
TCGATCCCCGCCTTGGCCCCGTGACGGTCGGCAAGGACGGCATCGTCAGCCAAGGCGCGATCCGGGTCGGCAGAATCGGC
CTGGTGCGCCCGGACGACCTGTCCACCTTCGCCAAGGACGGCGACAACCTCTACCGCAACACCACCAACACCGCCCCGCA
GCCCGTCACGGACGCCCAGATCCACCAGGGCATGCTGGAAGCCTCGAACGTCCAACCCGTGATCGAGATCACCAAGCTGA
TCGAGATCCAGCGCGCCTACGAGAGCGTCGCCAAGATGATGGACAACACCGCCGAACTCTCGCGCAGCGCCGTCGAGCGT
CTGGGCAAGATCAACTAG

Upstream 100 bases:

>100_bases
CTTCCTATTTGTTGATTTTAATGGCATTTTAGCGCTGGCACGAAGGTTGCTTCTGGGGTTGCGACGCATTTGTCGCGTCA
GCCGCCCGAGTTAACTCGCC

Downstream 100 bases:

>100_bases
GGAACGCTAGCCGATGCAAGCTCTCCGCACCGCCGCTTCGGGTATGGCTGCTCAGCAGCTGAACGTCGAAGTCATCTCGA
ACAACATCGCCAACATGAAC

Product: flagellar basal-body rod protein FlgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKFVMDTGVARNFTQGPMTKTGG
DYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIG
LVRPDDLSTFAKDGDNLYRNTTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRSAVER
LGKIN

Sequences:

>Translated_245_residues
MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKFVMDTGVARNFTQGPMTKTGG
DYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIG
LVRPDDLSTFAKDGDNLYRNTTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRSAVER
LGKIN
>Mature_245_residues
MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKFVMDTGVARNFTQGPMTKTGG
DYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQAGAPVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIG
LVRPDDLSTFAKDGDNLYRNTTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRSAVER
LGKIN

Specific function: Unknown

COG id: COG4786

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family

Homologues:

Organism=Escherichia coli, GI1787318, Length=266, Percent_Identity=33.8345864661654, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787317, Length=245, Percent_Identity=29.3877551020408, Blast_Score=74, Evalue=9e-15,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGF_CAUCR (Q06171)

Other databases:

- EMBL:   S52478
- EMBL:   AE005673
- PIR:   F87504
- PIR:   S27303
- RefSeq:   NP_420866.1
- ProteinModelPortal:   Q06171
- SMR:   Q06171
- GeneID:   942985
- GenomeReviews:   AE005673_GR
- KEGG:   ccr:CC_2063
- NMPDR:   fig|190650.1.peg.2046
- TIGR:   CC_2063
- HOGENOM:   HBG579156
- OMA:   SDGHAVQ
- ProtClustDB:   CLSK890756
- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836
- TIGRFAMs:   TIGR03506
- TIGRFAMs:   TIGR02490

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod

EC number: NA

Molecular weight: Translated: 26417; Mature: 26417

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF
CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHEEECCCCCCCCCCCCCCCEEE
VMDTGVARNFTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQA
EEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCEECCCCEEEEECC
GAPVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLYRN
CCCEEECCCCEEEECCCCCCEEECCCCCCCCCCEEECEEEEECCCCHHHHHHCCCHHCCC
TTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRSAVER
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKIN
HCCCC
>Mature Secondary Structure
MDNALYVGLSRQMTLRRELDIVANNIANANTTGFKVEDLMVRTEQAKPAKTLDGSSPVKF
CCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHEEECCCCCCCCCCCCCCCEEE
VMDTGVARNFTQGPMTKTGGDYDLAINGMGFFKVQANGGERYTRDGRFTTNPEGILVTQA
EEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCEEECCCCEECCCCEEEEECC
GAPVLDDGGGQITIDPRLGPVTVGKDGIVSQGAIRVGRIGLVRPDDLSTFAKDGDNLYRN
CCCEEECCCCEEEECCCCCCEEECCCCCCCCCCEEECEEEEECCCCHHHHHHCCCHHCCC
TTNTAPQPVTDAQIHQGMLEASNVQPVIEITKLIEIQRAYESVAKMMDNTAELSRSAVER
CCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKIN
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1474584; 11259647