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The map label for this gene is ycjC [C]

Identifier: 16126237

GI number: 16126237

Start: 2197957

End: 2198556

Strand: Direct

Name: ycjC [C]

Synonym: CC_1994

Alternate gene names: 16126237

Gene position: 2197957-2198556 (Clockwise)

Preceding gene: 16126236

Following gene: 16126238

Centisome position: 54.72

GC content: 71.83

Gene sequence:

>600_bases
GTGCCGCCCACGGACGCCGACACCGCCGCCGACCTGGCCCTGGCCGCCCGGCTTGAGACCCTGCGGCGGGAGCGCGATCT
GTCGCTGGACGCCGCCGCCGCTCTGACGGGGCTCAGCCGGGCGACGATCTCGCGGATCGAGCGCGGAGAGACCAGTCCCA
CCGCCAATGCCCTCGGACGGCTCTGCAACGCCTACGGCTTGACGATGTCGCGCTTGCTGGCGGCGGTGGAGACCAGCGCG
CCTCGGCTTCTGCGCGGCGTGGACGCCGCGCGTTGGCGCGATCCGGAGAGCGGCTTCTTGCGCACCCTGATCGCCCCGCC
GACCGAAGGCTACGCCACCGAGCTGGCGCTGGGGGAGCTGCCGCCCGGCGCGGAGGTCCGCTACGAACTCGACCGGCCCC
AGCGTGAAGGGTACGCCCCCGCCGGGCGCGAGCAGTTCTTCTATCTGATCGCGGGCGAGCTCCATCTCGACATCGAGGCC
GAGACCTATCGGCTGAGCCCCGGCGACTGCCTGCGCCATCACGGCGTCGACGCCAAGCGGATCGCCAATCCGGGCGCTGA
GCTCGCCCGCTATCTCATCATCAACACCACGACGGTCTAG

Upstream 100 bases:

>100_bases
AGCTTGGTGTCGGGCTGCCGAGCTAGGGTCGGGGCGCCCCTTGCAATCCGATCAATTTTGAGAAAATTTCTCTTCTGTGA
GATTTGCAGAGGAGAGCTAT

Downstream 100 bases:

>100_bases
ACGCCATGCCCAAGCCGCAGCTTCGCATCATCGCCGGCGATTTCGAGGATCCTCGCATCATCGCCCTGCTGGCCCACCAC
TTCGCAACCATGCGCTCCAC

Product: Cro/CI family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Helix-Turn-Helix Family Protein; Transcription Regulator Protein; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MPPTDADTAADLALAARLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGRLCNAYGLTMSRLLAAVETSA
PRLLRGVDAARWRDPESGFLRTLIAPPTEGYATELALGELPPGAEVRYELDRPQREGYAPAGREQFFYLIAGELHLDIEA
ETYRLSPGDCLRHHGVDAKRIANPGAELARYLIINTTTV

Sequences:

>Translated_199_residues
MPPTDADTAADLALAARLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGRLCNAYGLTMSRLLAAVETSA
PRLLRGVDAARWRDPESGFLRTLIAPPTEGYATELALGELPPGAEVRYELDRPQREGYAPAGREQFFYLIAGELHLDIEA
ETYRLSPGDCLRHHGVDAKRIANPGAELARYLIINTTTV
>Mature_198_residues
PPTDADTAADLALAARLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGRLCNAYGLTMSRLLAAVETSAP
RLLRGVDAARWRDPESGFLRTLIAPPTEGYATELALGELPPGAEVRYELDRPQREGYAPAGREQFFYLIAGELHLDIEAE
TYRLSPGDCLRHHGVDAKRIANPGAELARYLIINTTTV

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21612; Mature: 21480

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPTDADTAADLALAARLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LCNAYGLTMSRLLAAVETSAPRLLRGVDAARWRDPESGFLRTLIAPPTEGYATELALGEL
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCHHHHHEECCCCCCCHHHEECCCC
PPGAEVRYELDRPQREGYAPAGREQFFYLIAGELHLDIEAETYRLSPGDCLRHHGVDAKR
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEEECCCHHHHHHCCCCHHH
IANPGAELARYLIINTTTV
HCCCHHHHHHHHHEEECCC
>Mature Secondary Structure 
PPTDADTAADLALAARLETLRRERDLSLDAAAALTGLSRATISRIERGETSPTANALGR
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LCNAYGLTMSRLLAAVETSAPRLLRGVDAARWRDPESGFLRTLIAPPTEGYATELALGEL
HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCHHHHHEECCCCCCCHHHEECCCC
PPGAEVRYELDRPQREGYAPAGREQFFYLIAGELHLDIEAETYRLSPGDCLRHHGVDAKR
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCEEECCCHHHHHHCCCCHHH
IANPGAELARYLIINTTTV
HCCCHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA