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The map label for this gene is ompW [C]

Identifier: 16125658

GI number: 16125658

Start: 1556623

End: 1557267

Strand: Direct

Name: ompW [C]

Synonym: CC_1409

Alternate gene names: 16125658

Gene position: 1556623-1557267 (Clockwise)

Preceding gene: 16125657

Following gene: 16125659

Centisome position: 38.75

GC content: 63.41

Gene sequence:

>645_bases
ATGAAGAAGCTCGCTCTTTCGCTCGTCGCCTTTGGCGCGCTCGCCGCCGGCGCCGCCCAGGCTCAAGACTTTACGCCGAA
CGCCAAGGGCGACCTGATCGTCCATGCGCGCCTGACGCAGGTTGCGCCGGCCAAGGACGCCGCCATCCTGACTGCCGCCG
GCGCCAATTCGGGCCTGAAGGCGCATGTCGGCAATGACATCAAGCCGACGCTGGGCTTCACCTACTTCCTGACCGACAAG
GTCGCCGTCGAGGCCATCCTCGGCACCACCGAACACAACATCCGCGCTCAAGGCCCGGGCACTGACGTGCTGGTTCACAA
GACTTGGGTGCTGCCGCCGGTCGTGACGCTGCAATATCACCCGCTCCCGGCCTCGCAGGTCAGCCCCTATGTCGGCGCGG
GCCTGAACTACATGCTGTTCTACAGCGGCAAGAACAAGAACGGCTTCACGGTGAAGGTGGACGACGGCGTCGGCTACGCC
CTGCAGGCCGGCGTGAATATCAAGATGAAGAACAGCTGGCTGGTGAACGCCGACGTCAAGAAGGTCTATTTCAGCACCGA
CGCCAAGATCAACGGCGGCGCGCTGAAGGCCAAGGTCGACCTCGATCCGGTCGTCGCTTCGATCGGCCTGTCGCGCAAAT
TCTAA

Upstream 100 bases:

>100_bases
CGGCTTTCCAGTCTGACACAGGTCAAATACTGAGGCGGGCAAGTCGTCCAAATTCCCCTCGCGACAAGAAACAAGACGTC
GCAGGAATTGGGGATAGACC

Downstream 100 bases:

>100_bases
CCCCCCGGCGGACGTCCCCGGTCGTCCGTCCTCTGGCTCCCCGTCGTTCGCCGGCGGGGAGCTTTTCTTTGTGCGGTCAG
GACCAGACGTGACGGAGATC

Product: outer membrane protein OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKKLALSLVAFGALAAGAAQAQDFTPNAKGDLIVHARLTQVAPAKDAAILTAAGANSGLKAHVGNDIKPTLGFTYFLTDK
VAVEAILGTTEHNIRAQGPGTDVLVHKTWVLPPVVTLQYHPLPASQVSPYVGAGLNYMLFYSGKNKNGFTVKVDDGVGYA
LQAGVNIKMKNSWLVNADVKKVYFSTDAKINGGALKAKVDLDPVVASIGLSRKF

Sequences:

>Translated_214_residues
MKKLALSLVAFGALAAGAAQAQDFTPNAKGDLIVHARLTQVAPAKDAAILTAAGANSGLKAHVGNDIKPTLGFTYFLTDK
VAVEAILGTTEHNIRAQGPGTDVLVHKTWVLPPVVTLQYHPLPASQVSPYVGAGLNYMLFYSGKNKNGFTVKVDDGVGYA
LQAGVNIKMKNSWLVNADVKKVYFSTDAKINGGALKAKVDLDPVVASIGLSRKF
>Mature_214_residues
MKKLALSLVAFGALAAGAAQAQDFTPNAKGDLIVHARLTQVAPAKDAAILTAAGANSGLKAHVGNDIKPTLGFTYFLTDK
VAVEAILGTTEHNIRAQGPGTDVLVHKTWVLPPVVTLQYHPLPASQVSPYVGAGLNYMLFYSGKNKNGFTVKVDDGVGYA
LQAGVNIKMKNSWLVNADVKKVYFSTDAKINGGALKAKVDLDPVVASIGLSRKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=225, Percent_Identity=32, Blast_Score=77, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22502; Mature: 22502

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLALSLVAFGALAAGAAQAQDFTPNAKGDLIVHARLTQVAPAKDAAILTAAGANSGLK
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCEE
AHVGNDIKPTLGFTYFLTDKVAVEAILGTTEHNIRAQGPGTDVLVHKTWVLPPVVTLQYH
EECCCCCCCCCCEEEEEECHHEEEEEECCCCCCEEECCCCCEEEEEEEECCCCEEEEEEC
PLPASQVSPYVGAGLNYMLFYSGKNKNGFTVKVDDGVGYALQAGVNIKMKNSWLVNADVK
CCCHHHCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEECCEEEEECCCEEEECCEE
KVYFSTDAKINGGALKAKVDLDPVVASIGLSRKF
EEEEECCCEECCCEEEEEECCCHHHHHCCCCCCC
>Mature Secondary Structure
MKKLALSLVAFGALAAGAAQAQDFTPNAKGDLIVHARLTQVAPAKDAAILTAAGANSGLK
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCEE
AHVGNDIKPTLGFTYFLTDKVAVEAILGTTEHNIRAQGPGTDVLVHKTWVLPPVVTLQYH
EECCCCCCCCCCEEEEEECHHEEEEEECCCCCCEEECCCCCEEEEEEEECCCCEEEEEEC
PLPASQVSPYVGAGLNYMLFYSGKNKNGFTVKVDDGVGYALQAGVNIKMKNSWLVNADVK
CCCHHHCCCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEEECCEEEEECCCEEEECCEE
KVYFSTDAKINGGALKAKVDLDPVVASIGLSRKF
EEEEECCCEECCCEEEEEECCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]