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The map label for this gene is 16125578

Identifier: 16125578

GI number: 16125578

Start: 1481413

End: 1483026

Strand: Direct

Name: 16125578

Synonym: CC_1329

Alternate gene names: NA

Gene position: 1481413-1483026 (Clockwise)

Preceding gene: 16125577

Following gene: 16125579

Centisome position: 36.88

GC content: 67.72

Gene sequence:

>1614_bases
ATGCTCTACGCCATTCTTTGCTACAACCACGAAGACGTCGTCTGCGCCTGGTCCAAGGAAGAGGACGCGGCGGTGATGGA
GAAGCTGGGCGTGGTCCAACAGCGCTTGGCCGAGGAGGGGCGCCTGGGGCCCGTCGCGCGCCTAATGCCGACCACGGCGG
CGACCACCCCTGCGCAAGGATCGCGAACCGCCCCTGGTGCTGGACGGTCCCTTCGCCGAGACCAAAGAGCAACTGCTCGG
CTTCTACGTCGTCGACTGCGAGTCCCTCGATGGCGCGCTGCAGGTCGCCCAGGATCTCGGCAAGGCCAATCCCGGCGGCT
CCTACGAGATCCGTCCGATCGCCATGTTCCAGCCAGGTCCCGCAGGCGCGTGACCGACTTCGGCTGGATCGAGGGCGCGA
TCGCCGCCGCTCGCCCCCAGGCCATGGCGGCGCTGCTTCGCTATTTCCGCGACATGGACGCGGCCGAGGAGGCCTTTCAG
GACGCCTGCCTGCGTGCCCTCAAGGCTTGGCCGAAGAACGGTCCGCCGCGCGATCCGACCGCCTGGCTGATCATGGTCGG
TCGCAACGCCGCCATCGACGCGGTTCGCAAGACCAGCCGAAACACGGTGCTGCCGCCCGAGGAGCTGCTCTCCGATCTGG
AGGACGCCGAGGCCGAGGCCGCCGAGCGCTTGGATAGTTCGCACTATCGCGACGATGTCCTGCGCCTGTTGTTCATCTGT
TGCCATCCGGACCTTCCGGCCACCCAGCAGATCGCGCTGGCGCTGCGGATCGTCTCGGGCCTGTCGGTGCGCGAGATCGC
CCGGGCCTTCCTGGTCAGCGAAGCGGCGATGGAGCAACGCATCACGCGCGCCAAGGCCCGGATCGGCGTCGGTGGCGCGC
CGTTCGAAGCGCCGGGGCCTATCGAACGCGCCGAGCGGTTCGCGGCGGTGGCGGCGATGATCTATCTGGTCTTCACCGAG
GGCTACTCTGCCAGCGGCAAGGCCTTGGAGGCCAAGGGCGGTCTTTGCGACGAGGCCATCCGCTTGGCGCGCCTGCTGCT
GCGACTGTTTCCATCCGAGCCCGAGATGATGGGCCTGACCGCGCTGCTTCTGTTGCAGCATTCGCGATCGGACGCCCGCT
TCGGTGACGACGGCACGGCGATCCTGCTCGACGACCAGGATCGAAGTCTCTGGAGTCGCAGAATGATCGATGAGGGTTTG
GCCCTGATCGATAAGGCCATGCTCAAGAAAGCCCCGGGACCTTACCAGGTGCAGGCGGCGATCGCCGCGCTGCATGCCCG
CGCGGCGCGGGCAGAGGACATCGACTGGGCGGGCGTCGATCGCCTCTACGCCACGTTGGAGATCATGCAGCCGTCGCCCG
TCGTTACGCTGAACCGGGCGGTGGCGACGGCGAAGGTGTGGGGGCCCGACGCCGCTCTGGAAATGATCGAGCCCCTGGGC
GCGCGGCTCGACGCCTATTTTCACTATCACGGCGCCCGCGGAGCTTTCCTGATGCAAGCGGGGCGCACGGTCGAGGCGCG
TAAGGCCTTCGACCGCGCGATTGCGCTGGCCGGCACGGCGGCGCAGGCGGCGAACATCCGCCAGTATCTGGACACGATGG
CGACCAGGGTCTGA

Upstream 100 bases:

>100_bases
TCGCCTTCGCGCCCTCGGGACCTGAACCCAAAAATCTTCCTGCCCGCTGTCTGAAGACGCCATAGTCCGTCGTCCTTGTG
ACGGGAGAAGAGGACCGCCC

Downstream 100 bases:

>100_bases
ACACGAGGGCGCTGCTGTCGAATATGTTCTTGTTATGTTCGCATCAATCGCGCATTCTCTCGCCATGGCTGAGGCAGCGA
AACTTGGGCCCGCCGCGCGA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MLYAILCYNHEDVVCAWSKEEDAAVMEKLGVVQQRLAEEGRLGPVARLMPTTAATTPAQGSRTAPGAGRSLRRDQRATAR
LLRRRLRVPRWRAAGRPGSRQGQSRRLLRDPSDRHVPARSRRRVTDFGWIEGAIAAARPQAMAALLRYFRDMDAAEEAFQ
DACLRALKAWPKNGPPRDPTAWLIMVGRNAAIDAVRKTSRNTVLPPEELLSDLEDAEAEAAERLDSSHYRDDVLRLLFIC
CHPDLPATQQIALALRIVSGLSVREIARAFLVSEAAMEQRITRAKARIGVGGAPFEAPGPIERAERFAAVAAMIYLVFTE
GYSASGKALEAKGGLCDEAIRLARLLLRLFPSEPEMMGLTALLLLQHSRSDARFGDDGTAILLDDQDRSLWSRRMIDEGL
ALIDKAMLKKAPGPYQVQAAIAALHARAARAEDIDWAGVDRLYATLEIMQPSPVVTLNRAVATAKVWGPDAALEMIEPLG
ARLDAYFHYHGARGAFLMQAGRTVEARKAFDRAIALAGTAAQAANIRQYLDTMATRV

Sequences:

>Translated_537_residues
MLYAILCYNHEDVVCAWSKEEDAAVMEKLGVVQQRLAEEGRLGPVARLMPTTAATTPAQGSRTAPGAGRSLRRDQRATAR
LLRRRLRVPRWRAAGRPGSRQGQSRRLLRDPSDRHVPARSRRRVTDFGWIEGAIAAARPQAMAALLRYFRDMDAAEEAFQ
DACLRALKAWPKNGPPRDPTAWLIMVGRNAAIDAVRKTSRNTVLPPEELLSDLEDAEAEAAERLDSSHYRDDVLRLLFIC
CHPDLPATQQIALALRIVSGLSVREIARAFLVSEAAMEQRITRAKARIGVGGAPFEAPGPIERAERFAAVAAMIYLVFTE
GYSASGKALEAKGGLCDEAIRLARLLLRLFPSEPEMMGLTALLLLQHSRSDARFGDDGTAILLDDQDRSLWSRRMIDEGL
ALIDKAMLKKAPGPYQVQAAIAALHARAARAEDIDWAGVDRLYATLEIMQPSPVVTLNRAVATAKVWGPDAALEMIEPLG
ARLDAYFHYHGARGAFLMQAGRTVEARKAFDRAIALAGTAAQAANIRQYLDTMATRV
>Mature_537_residues
MLYAILCYNHEDVVCAWSKEEDAAVMEKLGVVQQRLAEEGRLGPVARLMPTTAATTPAQGSRTAPGAGRSLRRDQRATAR
LLRRRLRVPRWRAAGRPGSRQGQSRRLLRDPSDRHVPARSRRRVTDFGWIEGAIAAARPQAMAALLRYFRDMDAAEEAFQ
DACLRALKAWPKNGPPRDPTAWLIMVGRNAAIDAVRKTSRNTVLPPEELLSDLEDAEAEAAERLDSSHYRDDVLRLLFIC
CHPDLPATQQIALALRIVSGLSVREIARAFLVSEAAMEQRITRAKARIGVGGAPFEAPGPIERAERFAAVAAMIYLVFTE
GYSASGKALEAKGGLCDEAIRLARLLLRLFPSEPEMMGLTALLLLQHSRSDARFGDDGTAILLDDQDRSLWSRRMIDEGL
ALIDKAMLKKAPGPYQVQAAIAALHARAARAEDIDWAGVDRLYATLEIMQPSPVVTLNRAVATAKVWGPDAALEMIEPLG
ARLDAYFHYHGARGAFLMQAGRTVEARKAFDRAIALAGTAAQAANIRQYLDTMATRV

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 59023; Mature: 59023

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00037 MYB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYAILCYNHEDVVCAWSKEEDAAVMEKLGVVQQRLAEEGRLGPVARLMPTTAATTPAQG
CEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCC
SRTAPGAGRSLRRDQRATARLLRRRLRVPRWRAAGRPGSRQGQSRRLLRDPSDRHVPARS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHCCCCCCCCCCHH
RRRVTDFGWIEGAIAAARPQAMAALLRYFRDMDAAEEAFQDACLRALKAWPKNGPPRDPT
HCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
AWLIMVGRNAAIDAVRKTSRNTVLPPEELLSDLEDAEAEAAERLDSSHYRDDVLRLLFIC
EEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CHPDLPATQQIALALRIVSGLSVREIARAFLVSEAAMEQRITRAKARIGVGGAPFEAPGP
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
IERAERFAAVAAMIYLVFTEGYSASGKALEAKGGLCDEAIRLARLLLRLFPSEPEMMGLT
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
ALLLLQHSRSDARFGDDGTAILLDDQDRSLWSRRMIDEGLALIDKAMLKKAPGPYQVQAA
HHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IAALHARAARAEDIDWAGVDRLYATLEIMQPSPVVTLNRAVATAKVWGPDAALEMIEPLG
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHEEEECCCHHHHHHHHHHH
ARLDAYFHYHGARGAFLMQAGRTVEARKAFDRAIALAGTAAQAANIRQYLDTMATRV
HHHHHHHEECCCCCHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLYAILCYNHEDVVCAWSKEEDAAVMEKLGVVQQRLAEEGRLGPVARLMPTTAATTPAQG
CEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCC
SRTAPGAGRSLRRDQRATARLLRRRLRVPRWRAAGRPGSRQGQSRRLLRDPSDRHVPARS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHCCCCCCCCCCHH
RRRVTDFGWIEGAIAAARPQAMAALLRYFRDMDAAEEAFQDACLRALKAWPKNGPPRDPT
HCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
AWLIMVGRNAAIDAVRKTSRNTVLPPEELLSDLEDAEAEAAERLDSSHYRDDVLRLLFIC
EEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CHPDLPATQQIALALRIVSGLSVREIARAFLVSEAAMEQRITRAKARIGVGGAPFEAPGP
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
IERAERFAAVAAMIYLVFTEGYSASGKALEAKGGLCDEAIRLARLLLRLFPSEPEMMGLT
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
ALLLLQHSRSDARFGDDGTAILLDDQDRSLWSRRMIDEGLALIDKAMLKKAPGPYQVQAA
HHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IAALHARAARAEDIDWAGVDRLYATLEIMQPSPVVTLNRAVATAKVWGPDAALEMIEPLG
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHEEEECCCHHHHHHHHHHH
ARLDAYFHYHGARGAFLMQAGRTVEARKAFDRAIALAGTAAQAANIRQYLDTMATRV
HHHHHHHEECCCCCHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]