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The map label for this gene is rarA [H]

Identifier: 16125532

GI number: 16125532

Start: 1429975

End: 1431276

Strand: Direct

Name: rarA [H]

Synonym: CC_1283

Alternate gene names: 16125532

Gene position: 1429975-1431276 (Clockwise)

Preceding gene: 16125531

Following gene: 16125533

Centisome position: 35.6

GC content: 68.2

Gene sequence:

>1302_bases
ATGTCCGATCTCTTTCAGGCCGCCGGCCTGACTCCCCATGCGCCATCCCCTCTGGCCGACCGGCTGCGGCCGCAGAGCCT
CGACGAGGTGGTGGGGCAGCAGCATCTTTTGGGACCTGAGGGGCCGATCGGCCGCATGGCCGCCGCCCGCCGTCTGGCCT
CGATGATCCTGTGGGGACCGCCGGGCACCGGCAAGACCACGATCGCCCGCCTGCTGGCCAAGGCCGGCGGCTATGAGTTC
ATGCAGATCTCGGCGGTGTTCTCGGGCGTCGCCGACCTGAAAAAGGCCTTCGAGCAGGCCCGCGCGCGCCGGATGGCGGG
ACAGAGCACCCTGCTGTTCGTCGACGAGATCCACCGCTTCAACCGCGCCCAGCAGGACGGCTTTCTGCCGTTCGTGGAGG
AGGGGATCGTCACCCTGGTCGGGGCCACGACCGAGAACCCTTCGTTCGAGCTGAACGGCGCGTTGCTGTCGCGCTGCCAG
GTGTTCGTGCTCAAGCGCCTGACCGAGGAGTCGCTGGAGCTTCTGCTGCAACGCGCCGAGGCCGCCGAAAACCGGCCTCT
GCCGATCGACGCCGAGGCGCGTTCGGCCCTGGTGGCCATGGCCGACGGCGACGGCCGCTATCTGCTGACCCTGGCCGAGA
CCCTGTTCTCGATCGGGACCGACACGCCGCTGAATCCGACCCAGCTGGGCCAATTCCTGCAGAAGCGCCGCCCGGCCTAC
GACAAGGACCGCGAGGAGCACTACAACCTCATCTCGGCCCTGCATAAGTCGGTGCGCGGCAGCGATCCCGATGCGGCCCT
TTACTGGTTGGCGCGGATGCTGGAGGGCGGCGAGGACCCGCTGTTCATCGCCCGCCGCCTGGTGCGCATGGCGTCCGAAG
ACATTGGCGCAGCCGATCCGCTGAGTCTGCTGCTGACGACCGCGGCCAAGGACGCCTACGACTTTCTGGGATCGCCCGAG
GGCGAGCTGGCCCTGGCCCAGGCCGTCGTCCACATGGCCAGCGCGCCCAAGTCCAATGCCGTCTACACGGCCTACAAGGC
GGCCCGGCGCGCGGCCAAGGAGACGGGCAGCCTGATGCCGCCGTCGCACATCCTGAACGCCCCGACCAAGCTGATGAAGT
CGCTGGGCTATGGTGACGGCTACGCCTACGACCACGACGTCGAGGGCGGGGTCTCGGGCCAGAACTATTTTCCGGACGGC
ATGGAGCGCCGGCGCTTCTATGAGCCCAAGCCGGTTGGCGCCGAGGCCAAGGTGCGTGAGCGCTTGGAAGCCTGGGGCAA
GGTGCGTAAGGACGGCAAATGA

Upstream 100 bases:

>100_bases
CGGCTTGCCGTTCCTCTATTGATGAACGGCCCCCTTTCTTGGAGCGTGGCGGGCGGCGAAACCGCTCACACTTTCGCCTG
CCACGCTCTAGAAGAGTCGA

Downstream 100 bases:

>100_bases
GCAGTCCGAAATTCCGCCGTCCTCCCGCCCAGGCCAAGCCCAAGGCCTCCGAAACCCCCATCGCCCTGACGCCCGACGAG
ATCGCGGCGGCTCAATCGTG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MSDLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGPPGTGKTTIARLLAKAGGYEF
MQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQ
VFVLKRLTEESLELLLQRAEAAENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIGTDTPLNPTQLGQFLQKRRPAY
DKDREEHYNLISALHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADPLSLLLTTAAKDAYDFLGSPE
GELALAQAVVHMASAPKSNAVYTAYKAARRAAKETGSLMPPSHILNAPTKLMKSLGYGDGYAYDHDVEGGVSGQNYFPDG
MERRRFYEPKPVGAEAKVRERLEAWGKVRKDGK

Sequences:

>Translated_433_residues
MSDLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGPPGTGKTTIARLLAKAGGYEF
MQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQ
VFVLKRLTEESLELLLQRAEAAENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIGTDTPLNPTQLGQFLQKRRPAY
DKDREEHYNLISALHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADPLSLLLTTAAKDAYDFLGSPE
GELALAQAVVHMASAPKSNAVYTAYKAARRAAKETGSLMPPSHILNAPTKLMKSLGYGDGYAYDHDVEGGVSGQNYFPDG
MERRRFYEPKPVGAEAKVRERLEAWGKVRKDGK
>Mature_432_residues
SDLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGPPGTGKTTIARLLAKAGGYEFM
QISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQV
FVLKRLTEESLELLLQRAEAAENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIGTDTPLNPTQLGQFLQKRRPAYD
KDREEHYNLISALHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADPLSLLLTTAAKDAYDFLGSPEG
ELALAQAVVHMASAPKSNAVYTAYKAARRAAKETGSLMPPSHILNAPTKLMKSLGYGDGYAYDHDVEGGVSGQNYFPDGM
ERRRFYEPKPVGAEAKVRERLEAWGKVRKDGK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=437, Percent_Identity=42.3340961098398, Blast_Score=323, Evalue=2e-88,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=38.2151029748284, Blast_Score=269, Evalue=3e-72,
Organism=Escherichia coli, GI1787119, Length=420, Percent_Identity=47.8571428571429, Blast_Score=384, Evalue=1e-108,
Organism=Saccharomyces cerevisiae, GI6324111, Length=420, Percent_Identity=41.9047619047619, Blast_Score=311, Evalue=2e-85,
Organism=Saccharomyces cerevisiae, GI6324039, Length=207, Percent_Identity=25.6038647342995, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47265; Mature: 47134

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGP
CCCHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEECC
PGTGKTTIARLLAKAGGYEFMQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRF
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVFVLKRLTEESLELLLQRAE
HHHHCCCCCHHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIGTDTPLNPTQLGQFLQKRRPAY
HHCCCCCCCCHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
DKDREEHYNLISALHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH
LSLLLTTAAKDAYDFLGSPEGELALAQAVVHMASAPKSNAVYTAYKAARRAAKETGSLMP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
PSHILNAPTKLMKSLGYGDGYAYDHDVEGGVSGQNYFPDGMERRRFYEPKPVGAEAKVRE
CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHH
RLEAWGKVRKDGK
HHHHHHHHHCCCC
>Mature Secondary Structure 
SDLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGP
CCHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEECC
PGTGKTTIARLLAKAGGYEFMQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRF
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
NRAQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVFVLKRLTEESLELLLQRAE
HHHHCCCCCHHHHCCCEEEEECCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIGTDTPLNPTQLGQFLQKRRPAY
HHCCCCCCCCHHHHCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
DKDREEHYNLISALHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADP
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCH
LSLLLTTAAKDAYDFLGSPEGELALAQAVVHMASAPKSNAVYTAYKAARRAAKETGSLMP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
PSHILNAPTKLMKSLGYGDGYAYDHDVEGGVSGQNYFPDGMERRRFYEPKPVGAEAKVRE
CHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHH
RLEAWGKVRKDGK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]