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The map label for this gene is fecI [C]

Identifier: 16125381

GI number: 16125381

Start: 1279258

End: 1279764

Strand: Direct

Name: fecI [C]

Synonym: CC_1129

Alternate gene names: 16125381

Gene position: 1279258-1279764 (Clockwise)

Preceding gene: 16125380

Following gene: 16125382

Centisome position: 31.85

GC content: 65.09

Gene sequence:

>507_bases
ATGAGCGATCTGGCGAGCCTGCGCGCGCAGCGGCGCGACCTTTACCAGTTCATCGTCCGCCGTACACGGGACCCCGCCAC
CGCCGAAGACCTGGTGCAGGAGACCTTCGAACGGCTCCTGGCTTACGGACAGGCCAAGACGATCGTTGATCGTGCGGCGC
TCGGCTATGGCATCGCCCTCAATCTGGTCCGGGATCATTTTCGCCTGGCGCAACGACGCGCCTTTCAGGCCTTGGACGAC
GACATTCCCTGCCCAGACCCCGCGCCGGAGCAGATCCTGATGCATCGCCAGAAGGTCGAGGTCTTCAGTCAGGTCCTCGA
CGCCATGCCGCCGCTTCGACGCGACGTGTTCATCCGGCGCCGTCTGCACGGTCACTCCTCGCGACAAATTTCCAAAGATC
TGAGCCTGAGCGAGGCGGCGGTCGAGAAGCATGTCGCGCGGGCGTTGGAGCAATTGCGTCGCGAGGTCGCGCGCGCTGAA
CGTCGCGCAGGCGGGGGACGCTCATGA

Upstream 100 bases:

>100_bases
GTCCGGATCTGTGGGAACTGTCGCAAAATCGTGCTAACCCGCGCCCCATGCTGCGCTGGCCGATATTGCAAGACGCCTGC
CTGGGCCCGGAACCGCTGAG

Downstream 100 bases:

>100_bases
ACCGCATCGCCCAGGAAGCCGCTCTGTGGGCCGCCCGGCGCCTTGACGCCGATGCTCAACCTGACCCGGCCTTCGAGGCT
TGGAAGGCGGCGGATCCCGC

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Factor FecI; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Family Protein; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF-Sigma Factor

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSDLASLRAQRRDLYQFIVRRTRDPATAEDLVQETFERLLAYGQAKTIVDRAALGYGIALNLVRDHFRLAQRRAFQALDD
DIPCPDPAPEQILMHRQKVEVFSQVLDAMPPLRRDVFIRRRLHGHSSRQISKDLSLSEAAVEKHVARALEQLRREVARAE
RRAGGGRS

Sequences:

>Translated_168_residues
MSDLASLRAQRRDLYQFIVRRTRDPATAEDLVQETFERLLAYGQAKTIVDRAALGYGIALNLVRDHFRLAQRRAFQALDD
DIPCPDPAPEQILMHRQKVEVFSQVLDAMPPLRRDVFIRRRLHGHSSRQISKDLSLSEAAVEKHVARALEQLRREVARAE
RRAGGGRS
>Mature_167_residues
SDLASLRAQRRDLYQFIVRRTRDPATAEDLVQETFERLLAYGQAKTIVDRAALGYGIALNLVRDHFRLAQRRAFQALDDD
IPCPDPAPEQILMHRQKVEVFSQVLDAMPPLRRDVFIRRRLHGHSSRQISKDLSLSEAAVEKHVARALEQLRREVARAER
RAGGGRS

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19250; Mature: 19119

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLASLRAQRRDLYQFIVRRTRDPATAEDLVQETFERLLAYGQAKTIVDRAALGYGIAL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLVRDHFRLAQRRAFQALDDDIPCPDPAPEQILMHRQKVEVFSQVLDAMPPLRRDVFIRR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RLHGHSSRQISKDLSLSEAAVEKHVARALEQLRREVARAERRAGGGRS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SDLASLRAQRRDLYQFIVRRTRDPATAEDLVQETFERLLAYGQAKTIVDRAALGYGIAL
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLVRDHFRLAQRRAFQALDDDIPCPDPAPEQILMHRQKVEVFSQVLDAMPPLRRDVFIRR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RLHGHSSRQISKDLSLSEAAVEKHVARALEQLRREVARAERRAGGGRS
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA