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The map label for this gene is rplU [H]

Identifier: 16125350

GI number: 16125350

Start: 1231925

End: 1232614

Strand: Direct

Name: rplU [H]

Synonym: CC_1098

Alternate gene names: 16125350

Gene position: 1231925-1232614 (Clockwise)

Preceding gene: 16125349

Following gene: 16125351

Centisome position: 30.67

GC content: 68.84

Gene sequence:

>690_bases
ATGGTTTCGCTTTTCACCTTTCTTCCCCAGTACCCGACCGACAAGGTCGAACCTGAAGTCGCGCCGCGTGTGGCGGTGGG
GGCGGCCTCGCCTCTGTGGCTGATGTTCGGTGGCGCGGCGGCCGCCGGCGCGGCCTACTGGTGGTGGGCGTCGCGCTGGC
GCGAGGCGGTGAACCTGGAAGCCCTGATGGCGCTGACGCCCGAGCCCGTGGCGCCCGCCACTGAGGCTGAGGCGGTGCTC
GAGGCTGCGCCCGAGCCGATCGTCGAACCCATCCTTGAGCCTGTCGCGGATGCGGTGGTGGAAATCGTCGAGATCGCGAT
GGGCGGCGAGGAGGCCGCTCTGGCGCTGACCGCCGAGACCGTCGTGGAGATCGTCGCCGACACCGCCGAGGCGGCGATCA
CGGTCATCCCCGAACCTGAGCCTGAAGCCGTCGCCACCCCCGACCTCGTTCCGGATGTTGTGGCCGAACCTTTGGAAGCC
GCCGCCGACGATCTGACGCGGCTGGTGGGCATTGGCCCCAAGCTGGCGACCTCGCTGGCGGAACTGGGCGTGACCCGCTT
CAGCCAGATCGCCGCCTGGTCGCCTGACGAACTGGCCTCGATCGACCAGCTGCTGAATCTGAAGGGACGCGCCGAACGCG
ATGCCTGGATCGCCCAGGCCAAGCGCTTCGCCGTATCTTCGGAGGGGTAG

Upstream 100 bases:

>100_bases
GATCGGGCTGAATTGACGTAGCGGTAGTCTTTTTGCGCTTGCGAACGTAATTTCCGTGCTATGTTGCATTGCAACAAATC
GCGGTTGCCAGGAGCGCGCC

Downstream 100 bases:

>100_bases
GGGCTCTCAGCCAGCCCAGCCGAATCCCGGGCCGCTTGCGTCCCGCGCCAAGGGCGCGGTGGCGACGCCCCGCTTGACGC
TAAGGTCAGGCAAAAACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MVSLFTFLPQYPTDKVEPEVAPRVAVGAASPLWLMFGGAAAAGAAYWWWASRWREAVNLEALMALTPEPVAPATEAEAVL
EAAPEPIVEPILEPVADAVVEIVEIAMGGEEAALALTAETVVEIVADTAEAAITVIPEPEPEAVATPDLVPDVVAEPLEA
AADDLTRLVGIGPKLATSLAELGVTRFSQIAAWSPDELASIDQLLNLKGRAERDAWIAQAKRFAVSSEG

Sequences:

>Translated_229_residues
MVSLFTFLPQYPTDKVEPEVAPRVAVGAASPLWLMFGGAAAAGAAYWWWASRWREAVNLEALMALTPEPVAPATEAEAVL
EAAPEPIVEPILEPVADAVVEIVEIAMGGEEAALALTAETVVEIVADTAEAAITVIPEPEPEAVATPDLVPDVVAEPLEA
AADDLTRLVGIGPKLATSLAELGVTRFSQIAAWSPDELASIDQLLNLKGRAERDAWIAQAKRFAVSSEG
>Mature_229_residues
MVSLFTFLPQYPTDKVEPEVAPRVAVGAASPLWLMFGGAAAAGAAYWWWASRWREAVNLEALMALTPEPVAPATEAEAVL
EAAPEPIVEPILEPVADAVVEIVEIAMGGEEAALALTAETVVEIVADTAEAAITVIPEPEPEAVATPDLVPDVVAEPLEA
AADDLTRLVGIGPKLATSLAELGVTRFSQIAAWSPDELASIDQLLNLKGRAERDAWIAQAKRFAVSSEG

Specific function: This protein binds to 23S rRNA in the presence of protein L20 [H]

COG id: COG3743

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001787 [H]

Pfam domain/function: PF00829 Ribosomal_L21p [H]

EC number: NA

Molecular weight: Translated: 24070; Mature: 24070

Theoretical pI: Translated: 3.75; Mature: 3.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSLFTFLPQYPTDKVEPEVAPRVAVGAASPLWLMFGGAAAAGAAYWWWASRWREAVNLE
CCCHHHHCCCCCCCCCCCCCCCCCHHCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHH
ALMALTPEPVAPATEAEAVLEAAPEPIVEPILEPVADAVVEIVEIAMGGEEAALALTAET
HHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VVEIVADTAEAAITVIPEPEPEAVATPDLVPDVVAEPLEAAADDLTRLVGIGPKLATSLA
HHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ELGVTRFSQIAAWSPDELASIDQLLNLKGRAERDAWIAQAKRFAVSSEG
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVSLFTFLPQYPTDKVEPEVAPRVAVGAASPLWLMFGGAAAAGAAYWWWASRWREAVNLE
CCCHHHHCCCCCCCCCCCCCCCCCHHCCCCCHHHEECCHHHHHHHHHHHHHHHHHHHHHH
ALMALTPEPVAPATEAEAVLEAAPEPIVEPILEPVADAVVEIVEIAMGGEEAALALTAET
HHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
VVEIVADTAEAAITVIPEPEPEAVATPDLVPDVVAEPLEAAADDLTRLVGIGPKLATSLA
HHHHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
ELGVTRFSQIAAWSPDELASIDQLLNLKGRAERDAWIAQAKRFAVSSEG
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA