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The map label for this gene is ycjD [H]

Identifier: 16124676

GI number: 16124676

Start: 436545

End: 436889

Strand: Direct

Name: ycjD [H]

Synonym: CC_0421

Alternate gene names: 16124676

Gene position: 436545-436889 (Clockwise)

Preceding gene: 16124674

Following gene: 16124677

Centisome position: 10.87

GC content: 69.57

Gene sequence:

>345_bases
ATGGACGCCACCGCCAACGCCCGTCGCCTACGCCAATCCCAGACCCTGGCTGAGAAGACGCTGTGGACCCTGGTCCGGGC
GCACCGGCTGGGCGGGTTCAAGTTCAGGCGGCAGACGCCGATCGGCGGCTATTTCGCGGACTTCGTCTGCGAACAGGCCC
GGCTGATCGTCGAGCTGGACGGCGCGGCGCATGAGGGGCGGGAGGACTATGACGCCCGTCGCACCGAGGCGCTTGAGCGG
TTCGGCTATGCGGTGCTGAGGTTTCGCAACGAACGGGTGCTGGCCGATCCGGGCGGGACGGCGGACGATATTCTGGCGGC
GCTGCGGGACGCGCGGGGAGGGTGA

Upstream 100 bases:

>100_bases
ACATCGTCGCTCACCCTCTCCTTCTGGGAGAGGGAACGTGGCGCGAAAATCCCGATTCCTGTTGTTGAATGCGCCCAGGG
GTTGAGTCCATCCTCGCTCC

Downstream 100 bases:

>100_bases
AACCCCTCTCCCGACCGCTTCGCGGCCACCCTCTCCCTCTGGGAGAGGGATTCGCGTAGGCTGTTCCCATGACCACCGCC
CCGCCCGACGAAGCGCCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MDATANARRLRQSQTLAEKTLWTLVRAHRLGGFKFRRQTPIGGYFADFVCEQARLIVELDGAAHEGREDYDARRTEALER
FGYAVLRFRNERVLADPGGTADDILAALRDARGG

Sequences:

>Translated_114_residues
MDATANARRLRQSQTLAEKTLWTLVRAHRLGGFKFRRQTPIGGYFADFVCEQARLIVELDGAAHEGREDYDARRTEALER
FGYAVLRFRNERVLADPGGTADDILAALRDARGG
>Mature_114_residues
MDATANARRLRQSQTLAEKTLWTLVRAHRLGGFKFRRQTPIGGYFADFVCEQARLIVELDGAAHEGREDYDARRTEALER
FGYAVLRFRNERVLADPGGTADDILAALRDARGG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=104, Percent_Identity=46.1538461538462, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 12825; Mature: 12825

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATANARRLRQSQTLAEKTLWTLVRAHRLGGFKFRRQTPIGGYFADFVCEQARLIVELD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHEEEEEC
GAAHEGREDYDARRTEALERFGYAVLRFRNERVLADPGGTADDILAALRDARGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MDATANARRLRQSQTLAEKTLWTLVRAHRLGGFKFRRQTPIGGYFADFVCEQARLIVELD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHEEEEEC
GAAHEGREDYDARRTEALERFGYAVLRFRNERVLADPGGTADDILAALRDARGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]