Click here to switch to the map view.

The map label for this gene is gfcE [H]

Identifier: 16124424

GI number: 16124424

Start: 180241

End: 180801

Strand: Direct

Name: gfcE [H]

Synonym: CC_0169

Alternate gene names: 16124424

Gene position: 180241-180801 (Clockwise)

Preceding gene: 16124423

Following gene: 16124425

Centisome position: 4.49

GC content: 63.46

Gene sequence:

>561_bases
ATGTTGGCGGCCGTGGTTTTCATGATGGTCTCGACATCGAATGGTGTCGCCCATGCCCAGGTCGGCTCCGAGCCCGCCCC
CTTCGCGGGAGCGGCGCAAGCGGTCGACTATCTTCTGGGCCCTGGCGATAAGGTCCGGGTCACGGTGTACGGTGAGGAGT
CGCTGTCGGGCGAGTTCTTCGTCGCCGGCACTGGGCTGATGTCCTTGCCGCTGATCGGCGAGATCAAGGTCGGCGGCATG
ACCGTCGGCCAGTTCCAGACGGCGGTTCAGGACAAGCTGAAGGATGGCTACCTGAGGGACCCGCGCGTAAGCGCCGAAGT
GCTTACGTTCCGTCCCTTCTACATTCTGGGCGAGGTCGAGAAGCCTGGCACCTATCCCTACACCTCGGGCCTGACCGTTC
TGAACGCCGTGGCGACGGCGGGCGGCTTCACCTACCGGGCCGACAAGAAGATCGTCTACATCAAGCGCAACGGTGATGCG
TCCGAGATCAAGGGCGAGCTGAAGCCTTCGACCCTGGTGTCGCCCGGCGACACGATCCGCATTGGTGAGCGCTTCTTCTA
G

Upstream 100 bases:

>100_bases
CGGTCACGTGCGATGTGGCATTGCAACTTCCAGGTCTGACAAGTCCGAGATGAGACGCTTTTCCATGATCGGTTTTTCGA
AACTCTCTCGCGCGCTCGCC

Downstream 100 bases:

>100_bases
TTGGCTTGCCAGCATTGTTCGCAAAGGCCCGGCGGTGACGCCGGGCCTTTTTCGTTTGCGCCGCGCACCGACGCGCTCAC
GATGAGGCTTTAGGCGAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Group 4 capsule protein E homolog [H]

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MLAAVVFMMVSTSNGVAHAQVGSEPAPFAGAAQAVDYLLGPGDKVRVTVYGEESLSGEFFVAGTGLMSLPLIGEIKVGGM
TVGQFQTAVQDKLKDGYLRDPRVSAEVLTFRPFYILGEVEKPGTYPYTSGLTVLNAVATAGGFTYRADKKIVYIKRNGDA
SEIKGELKPSTLVSPGDTIRIGERFF

Sequences:

>Translated_186_residues
MLAAVVFMMVSTSNGVAHAQVGSEPAPFAGAAQAVDYLLGPGDKVRVTVYGEESLSGEFFVAGTGLMSLPLIGEIKVGGM
TVGQFQTAVQDKLKDGYLRDPRVSAEVLTFRPFYILGEVEKPGTYPYTSGLTVLNAVATAGGFTYRADKKIVYIKRNGDA
SEIKGELKPSTLVSPGDTIRIGERFF
>Mature_186_residues
MLAAVVFMMVSTSNGVAHAQVGSEPAPFAGAAQAVDYLLGPGDKVRVTVYGEESLSGEFFVAGTGLMSLPLIGEIKVGGM
TVGQFQTAVQDKLKDGYLRDPRVSAEVLTFRPFYILGEVEKPGTYPYTSGLTVLNAVATAGGFTYRADKKIVYIKRNGDA
SEIKGELKPSTLVSPGDTIRIGERFF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=167, Percent_Identity=31.7365269461078, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI1788376, Length=166, Percent_Identity=31.9277108433735, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 19793; Mature: 19793

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAAVVFMMVSTSNGVAHAQVGSEPAPFAGAAQAVDYLLGPGDKVRVTVYGEESLSGEFF
CHHHEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCEE
VAGTGLMSLPLIGEIKVGGMTVGQFQTAVQDKLKDGYLRDPRVSAEVLTFRPFYILGEVE
EEECCEEECCEEEEEEECCEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEEEECC
KPGTYPYTSGLTVLNAVATAGGFTYRADKKIVYIKRNGDASEIKGELKPSTLVSPGDTIR
CCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHCCCCCCCEEECCCCEEE
IGERFF
CCCCCC
>Mature Secondary Structure
MLAAVVFMMVSTSNGVAHAQVGSEPAPFAGAAQAVDYLLGPGDKVRVTVYGEESLSGEFF
CHHHEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCEE
VAGTGLMSLPLIGEIKVGGMTVGQFQTAVQDKLKDGYLRDPRVSAEVLTFRPFYILGEVE
EEECCEEECCEEEEEEECCEEHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEEEECC
KPGTYPYTSGLTVLNAVATAGGFTYRADKKIVYIKRNGDASEIKGELKPSTLVSPGDTIR
CCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEEEEECCCHHHHCCCCCCCEEECCCCEEE
IGERFF
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]