| Definition | Caulobacter crescentus CB15 chromosome, complete genome. |
|---|---|
| Accession | NC_002696 |
| Length | 4,016,947 |
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The map label for this gene is glnD
Identifier: 16124269
GI number: 16124269
Start: 14199
End: 17021
Strand: Direct
Name: glnD
Synonym: CC_0013
Alternate gene names: 16124269
Gene position: 14199-17021 (Clockwise)
Preceding gene: 16124268
Following gene: 16124275
Centisome position: 0.35
GC content: 67.62
Gene sequence:
>2823_bases ATGCCCCGTCGCCTTCGCCCCACCCGCCTGGAACACGTCGTCGACGGTCACGCCCTTCGGGCGAGGCTTTCGGCCGCCGC CCTCGACTCGATCGGTAATGAGGCCGAGCAGCGGGCCCGCGCCATCGACATCCTCAAACAGGCTCTGTTTCGCGGTCGGA TGATCGCCAAGGAGCGTTTGGAGAACGGCGCCAGCGGCGTCGAGACCAGTCGCCTGCTCAGCGGGGTCACCGACGAGGTG ATCACCGCCCTCTACGATTTCACGACCGTGCACGTCTTCCGGGCCCGCAACCCGACGGAAGGCGAACGCCTCTGCCTTCT GGCCGTCGGCGGCTATGGCCGGGGAACCCTGGCGCCGTTCAGCGACATCGATCTTCTGTTCCTGCGGCCCTACAAGCAGA CGCCGCACGCCGAGAGCGTGATCGAGTACATGCTGTATGCGTTGTGGGATCTGGGTTTCAAGGTCGGCCACGCCTCGCGG ACCATCGAGGAATGTGTGCGGCTTTCGAAGGAAGACTTCACGATCCGCACCTCGATCCTGGAGGCGCGACGCCTGACCGG CGACGAGCGTCTGGCCGAGGATCTGAAGAAGCGCTTCCGCGACGAGGTCATGAAGGCCACCGGCGCCCAGTTCGTCGCCG CCAAGCTCAAGGAGCGCGACGACCGCCAGGCCCGGGCCGGCGCCAGCCGCTACATGGTCGAGCCCAACGTCAAGGAAGGG AAGGGGGGTCTGCGCGACCTTCACACCCTGATGTGGATCGCCGAGTACCTGCATCCGGTCGACCGGCCCGAGGACGTCTT CAAGATGGAGGTGTTCTCGATCCGCGAGACCAAGGCCTTCATCCGGGCCTTCGACTTTCTGCATGCGGTGCGGGCGCATC TGCATTTCACCACCGGCCGGCCCGAAGAGCGCCTGACCTTCGACCTGCAGCCCGAGATCGCTCGCCGCATGGGCTATGGC GACCGGGGTGACGCCCCGGCGGTCGAGCGGTTCATGCGCCGCTACTTCCTGATCGCCAAGGAGGTCGGGACCCTGACCCG CGCCTTCTCGGCCAAGCTGGAGGCCGAGCACTTCAAGAACGAGCCCAAGGGCATCTCGCGTTTCCTCCCGGGCGCGCGCC CCAAGCGCAAGGCGCTCGATGTTGAAGGCTTCTACGAAGATGGCGGTCGCCTGAACATCGAAGGTCAGGAGATCTTCGAG GCCGATCCGGTCAACCTGATCCGCCTGTTCAAGATCGCTGACGAGCGCGACCTTGATCTGCATCCCGACGCCTTTACCGC CGTGACGCGCGCCCTGCCGCTGATCACCTCGCGGGTGCGCCGCGACCCCGACGCCTGTCGGGCATTCCTGGACTTGCTGG CGCGTGGCAAGCGCAGCTATCGGACCCTGACCCTGATGAACGACGCCGGGGTGCTGGGTCGCTTCATTCCGGAGTTCGGC CGCGTCGTCGCCCAGATGCAGTTCAACATGTACCACTCGTACACAGTGGACGAGCATACCCTGCGGGCGGTCGGCGTCAT CGGCGACATCGCCGCTGGGCGCCTGGTGGACGATCACCCTCTGGCGGTGTCGATCATGCCCTTGATCGAGGACCGCGAGG CCCTGTTCCTGGCCATGCTGTTGCACGACACCGGCAAGGGCGGCGTAGGCGGTCAGGAGAAGGCCGGCGCGCGCTCGGCC CGCAGCGCTTGCGAGCGCCTGGGCGTCGAGCGCAGCAAGGTCGAGCTGGTCGCCTGGCTGGTCGAGAACCACCTTGTGAT GAGCGATTTCGCCCAGAAGCGCGACGTCTCCGATCCTGGCACGGTCGCAGCCTTCGCACGGATCGTCGAGAACCCCGAGC GGCTACGCCTTCTGCTGGTCATCACCGTCGCCGACATCCGGGCTGTGGGGCCTGGGGTCTGGAACGGCTGGAAGGGCCAG CTGCTGCGCGAACTCTATAACGCGACCGAAGCGGTGTTCCGGGGCGGGCGCGGCAGCGACGCCGCCGCCAATGTCCAGCG CCACCAGGAAAGCACGGCCGAAGCCGCGCGGGCGGCGCTGCTCGAGACCGATCCCGCCGCCAAGGGCTGGGTGGCGGCGA TGGAGAACGCCTATTTCAGCGCCTTCTCGCAGGATGACCTGTTCCATCACGCCGAACTGGCGCGTCGTGCGGCGATCCAG GGCGGGGCCGCCGCCGAGGGGCAGGTACGTCCGGGAAGCAACGCCGCCGAGGTGGTTATCGCCGCCAAGGATCGTCGCGG TCTGTTCGCCGATCTCGCCCTGGCGATCTCGTCGCTGGGCGGCAATGTGGTTGGCGCAAGGGTGTTCACGTCCCGTCAGG GCCAGGCGCTGGACGTCTTCTATGTCCAGGATGTCACGGGCGCGCCGTTCGGCTGTGAGAATCCCCGCGCGCTGCGCCGC CTGGCCGACGCCCTGGAGGCCGCAGGCAAGGGCGACGCCCTGGCCGTCGAGCCTCGCCGGGGCTCTGAGCAGACCCGCGC CGCAGCCTTCGCGATCGCACCGTCGGTCACGATCGACAACGACGCCTCCAATGACGCGACGGTGGTCGAAGCCTCGGGAC GCGACCGCCCAGGCCTGCTGCACGCCCTGGCCAAGACCCTGGCCGACAGCGCCTTGTCCATCCAGTCGGCCCATATCGAC GGTTATGGCGAGCGGGCGGTCGACGCCTTCTACGTCCAGACGACCGAGGGCGGGAAGGTCACCGATACGCGCAAGCTCAA TGCTCTGAAGGCTGATCTGCTGGCGGCGCTGGAGCAGAACGAAGCCAGCGCCCCGGCGGCGCGCCCAGGCTTGAGACGAG CCCGGGCCAGCGTCGCGCGTTAG
Upstream 100 bases:
>100_bases CCGACCTCGACGTGGACGGCATGAGCCCGCGCGAGGCCCTCGAGGCGCTTTACCGCCTTAAGGGTCTGCTCACGGCCTAG CGGGTACCCATATAGACAAC
Downstream 100 bases:
>100_bases GGTTGGTCAGCCTTCCAGTCGCCTGACTTGCCGCCCGTCTTTTCCAGAAGGCGCACGGCCTCGATGACCATGCCTTTCTC GGCGGCCTTGAGCATGTCGT
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme
Number of amino acids: Translated: 940; Mature: 939
Protein sequence:
>940_residues MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEV ITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASR TIEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEG KGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYG DRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFE ADPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFG RVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSA RSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQ LLRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQ GGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRR LADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID GYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVAR
Sequences:
>Translated_940_residues MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEV ITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASR TIEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEG KGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYG DRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFE ADPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFG RVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSA RSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQ LLRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQ GGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRR LADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHID GYGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVAR >Mature_939_residues PRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERLENGASGVETSRLLSGVTDEVI TALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRT IEECVRLSKEDFTIRTSILEARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEGK GGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGRPEERLTFDLQPEIARRMGYGD RGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKNEPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEA DPVNLIRLFKIADERDLDLHPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFGR VVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAMLLHDTGKGGVGGQEKAGARSAR SACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPGTVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQL LRELYNATEAVFRGGRGSDAAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQG GAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRL ADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDG YGERAVDAFYVQTTEGGKVTDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVAR
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family
Homologues:
Organism=Escherichia coli, GI1786363, Length=820, Percent_Identity=31.7073170731707, Blast_Score=379, Evalue=1e-106,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLND_CAUCN (B8GWX0)
Other databases:
- EMBL: CP001340 - RefSeq: YP_002515388.1 - ProteinModelPortal: B8GWX0 - GeneID: 7332895 - GenomeReviews: CP001340_GR - KEGG: ccs:CCNA_00013 - OMA: MQHDLFH - ProtClustDB: PRK05092 - HAMAP: MF_00277 - InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR013546 - PANTHER: PTHR13734:SF1 - PIRSF: PIRSF006288 - SMART: SM00471 - TIGRFAMs: TIGR01693
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase
EC number: =2.7.7.59
Molecular weight: Translated: 103397; Mature: 103266
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERL CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENGASGVETSRLLSGVTDEVITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPF HCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEEECCCCCCCCCCC SDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRLSKEDFTIRTSIL CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHH EARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEG HHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC KGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGR CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC PEERLTFDLQPEIARRMGYGDRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKN CCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEADPVNLIRLFKIADERDLDL CCCHHHHHCCCCCCCCCCCCCCCEECCCCEEECCHHHHCCCCCHHHHHHHHHCCCCCCCC HPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFG CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH RVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAML HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCEECCCCCEEEEEHHHCCHHHHHHHHH LHDTGKGGVGGQEKAGARSARSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPG HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCH TVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQLLRELYNATEAVFRGGRGSD HHHHHHHHHCCHHHEEEEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC AAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQ HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVF CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE YVQDVTGAPFGCENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDN EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHEEECCCEEECC DASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC TDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVAR CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure PRRLRPTRLEHVVDGHALRARLSAAALDSIGNEAEQRARAIDILKQALFRGRMIAKERL CCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENGASGVETSRLLSGVTDEVITALYDFTTVHVFRARNPTEGERLCLLAVGGYGRGTLAPF HCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCEEEEEEECCCCCCCCCCC SDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRLSKEDFTIRTSIL CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHH EARRLTGDERLAEDLKKRFRDEVMKATGAQFVAAKLKERDDRQARAGASRYMVEPNVKEG HHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC KGGLRDLHTLMWIAEYLHPVDRPEDVFKMEVFSIRETKAFIRAFDFLHAVRAHLHFTTGR CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC PEERLTFDLQPEIARRMGYGDRGDAPAVERFMRRYFLIAKEVGTLTRAFSAKLEAEHFKN CCCCEEEECCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EPKGISRFLPGARPKRKALDVEGFYEDGGRLNIEGQEIFEADPVNLIRLFKIADERDLDL CCCHHHHHCCCCCCCCCCCCCCCEECCCCEEECCHHHHCCCCCHHHHHHHHHCCCCCCCC HPDAFTAVTRALPLITSRVRRDPDACRAFLDLLARGKRSYRTLTLMNDAGVLGRFIPEFG CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHH RVVAQMQFNMYHSYTVDEHTLRAVGVIGDIAAGRLVDDHPLAVSIMPLIEDREALFLAML HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCEECCCCCEEEEEHHHCCHHHHHHHHH LHDTGKGGVGGQEKAGARSARSACERLGVERSKVELVAWLVENHLVMSDFAQKRDVSDPG HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCH TVAAFARIVENPERLRLLLVITVADIRAVGPGVWNGWKGQLLRELYNATEAVFRGGRGSD HHHHHHHHHCCHHHEEEEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC AAANVQRHQESTAEAARAALLETDPAAKGWVAAMENAYFSAFSQDDLFHHAELARRAAIQ HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVF CCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEE YVQDVTGAPFGCENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDN EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHEEECCCEEECC DASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQTTEGGKV CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCC TDTRKLNALKADLLAALEQNEASAPAARPGLRRARASVAR CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA