Click here to switch to the map view.

The map label for this gene is potD [C]

Identifier: 13488312

GI number: 13488312

Start: 334707

End: 335768

Strand: Direct

Name: potD [C]

Synonym: mlr9377

Alternate gene names: 13488312

Gene position: 334707-335768 (Clockwise)

Preceding gene: 13488311

Following gene: 13488313

Centisome position: 95.11

GC content: 54.9

Gene sequence:

>1062_bases
ATGAAGAATATAGGAACGATCTCGAAGACTTCAATTGGAGCAATCGTGGCTACTCTGCTGCTCCATGTCTCGCATGCGCA
GAGCCAAGAGACGCTTACGATTTCTGCTTCGGGGGGGTCATACGACGCCTGCGTCAAGGCAGCCTATCTTGACGGGTGGG
AGAAAGAGACAGGCATTAAAGTCGTTGTAGGCGGTGGGGCATGGGACCTCGGTGTTTGGCGGGCACAGCAGGAGACGGGG
AAGACCGAGTGGGACGTTGCCACATCGGACCCCGGCCAGTTGCGCCAGCTGGTCCAAAATGGGTGGGTCATGCCGATTGA
TCCAGAACTCCCTAATAAAAATGGAGGCCTCGTCGATTTTCCGGGCCTCGTGCCCAAGTTTGATGGCAAAATCTATGCTC
TACCCACCGAAATTTTCTCGACTGTCGTCACCTACAATTCCAAGGCATTTAAGGGCGACAAGCCCAAGACCTGGGCTGAT
GTCTTCAATGCCGAAAAGTACCCAGGCAAACGTTTGTTTTCCAACGTCCCCGTCGACTTCGGAGTGCTGGAAGTTGCCCT
TCTGGCCGACGGGGTCGCGCCTGAAAATCTCTACCCGCTGGATGTAGACCGTGCGCTGAAGAAGTTGGACTCTATCAAGA
GCGACATCCTTTGGTATGATTTTGGAACTCAGCAAGTCGCGCTTTTGCAACAAGGCGACGCAGTGATCGGGGCCGGCTGG
GACGGCCGAGTGAAAGCCCTTCAGCGAGACGGCGGTACGATCGAATTCTCCACTGAGCAGGCGATCGTTAAACCGGATCT
TTGGATTCTGCCAAAGGGGGGCAATTCCGAACTCGGAGCTCGTTTTCTTGCCTTCATCGACAACCCTGAACGACAGGCCA
AATTCGCAACCTGCATCGGCTACGCTCCAGCCCTTCGTAAGGCGTACGACCTGCTGCCTGCCGATCAGAAGTTCACTGTC
GACCCGAATAATCTGAAGGGCGTCGTCGTGTGGAACGACGAATATTGGGCAAAAAACGCACGGGACGTCACCGCGCGCTT
TAATGAATGGCTCACCAAGTAG

Upstream 100 bases:

>100_bases
AGAATCCCATGCTTGATCGACCATCTGCTGGTCAAAACCACAATCAAGAAGGGAAAGTCTACCTGAACTGACCTCAGTTC
AGGCAACCTGGGAGGAAAAT

Downstream 100 bases:

>100_bases
GCGAGTTCGATCGCCTACGGTCGATAGCAAGCAATGAGGTAACAATCGTGTCCAACGCCAGTAAGGATTGCGGGTCGCCA
CCCGCAATCCAGATCAGCCG

Product: ABC transporter binding protein

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: None

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKNIGTISKTSIGAIVATLLLHVSHAQSQETLTISASGGSYDACVKAAYLDGWEKETGIKVVVGGGAWDLGVWRAQQETG
KTEWDVATSDPGQLRQLVQNGWVMPIDPELPNKNGGLVDFPGLVPKFDGKIYALPTEIFSTVVTYNSKAFKGDKPKTWAD
VFNAEKYPGKRLFSNVPVDFGVLEVALLADGVAPENLYPLDVDRALKKLDSIKSDILWYDFGTQQVALLQQGDAVIGAGW
DGRVKALQRDGGTIEFSTEQAIVKPDLWILPKGGNSELGARFLAFIDNPERQAKFATCIGYAPALRKAYDLLPADQKFTV
DPNNLKGVVVWNDEYWAKNARDVTARFNEWLTK

Sequences:

>Translated_353_residues
MKNIGTISKTSIGAIVATLLLHVSHAQSQETLTISASGGSYDACVKAAYLDGWEKETGIKVVVGGGAWDLGVWRAQQETG
KTEWDVATSDPGQLRQLVQNGWVMPIDPELPNKNGGLVDFPGLVPKFDGKIYALPTEIFSTVVTYNSKAFKGDKPKTWAD
VFNAEKYPGKRLFSNVPVDFGVLEVALLADGVAPENLYPLDVDRALKKLDSIKSDILWYDFGTQQVALLQQGDAVIGAGW
DGRVKALQRDGGTIEFSTEQAIVKPDLWILPKGGNSELGARFLAFIDNPERQAKFATCIGYAPALRKAYDLLPADQKFTV
DPNNLKGVVVWNDEYWAKNARDVTARFNEWLTK
>Mature_353_residues
MKNIGTISKTSIGAIVATLLLHVSHAQSQETLTISASGGSYDACVKAAYLDGWEKETGIKVVVGGGAWDLGVWRAQQETG
KTEWDVATSDPGQLRQLVQNGWVMPIDPELPNKNGGLVDFPGLVPKFDGKIYALPTEIFSTVVTYNSKAFKGDKPKTWAD
VFNAEKYPGKRLFSNVPVDFGVLEVALLADGVAPENLYPLDVDRALKKLDSIKSDILWYDFGTQQVALLQQGDAVIGAGW
DGRVKALQRDGGTIEFSTEQAIVKPDLWILPKGGNSELGARFLAFIDNPERQAKFATCIGYAPALRKAYDLLPADQKFTV
DPNNLKGVVVWNDEYWAKNARDVTARFNEWLTK

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38681; Mature: 38681

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIGTISKTSIGAIVATLLLHVSHAQSQETLTISASGGSYDACVKAAYLDGWEKETGIK
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEE
VVVGGGAWDLGVWRAQQETGKTEWDVATSDPGQLRQLVQNGWVMPIDPELPNKNGGLVDF
EEECCCCEECCEEECHHHCCCCCCEEECCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEC
PGLVPKFDGKIYALPTEIFSTVVTYNSKAFKGDKPKTWADVFNAEKYPGKRLFSNVPVDF
CCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCH
GVLEVALLADGVAPENLYPLDVDRALKKLDSIKSDILWYDFGTQQVALLQQGDAVIGAGW
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCEEEECCC
DGRVKALQRDGGTIEFSTEQAIVKPDLWILPKGGNSELGARFLAFIDNPERQAKFATCIG
CCHHHHEECCCCEEEEECCCEEECCCEEEEECCCCCHHHHEEEEEECCCHHHHHHHHHHH
YAPALRKAYDLLPADQKFTVDPNNLKGVVVWNDEYWAKNARDVTARFNEWLTK
HHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKNIGTISKTSIGAIVATLLLHVSHAQSQETLTISASGGSYDACVKAAYLDGWEKETGIK
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEE
VVVGGGAWDLGVWRAQQETGKTEWDVATSDPGQLRQLVQNGWVMPIDPELPNKNGGLVDF
EEECCCCEECCEEECHHHCCCCCCEEECCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEC
PGLVPKFDGKIYALPTEIFSTVVTYNSKAFKGDKPKTWADVFNAEKYPGKRLFSNVPVDF
CCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCH
GVLEVALLADGVAPENLYPLDVDRALKKLDSIKSDILWYDFGTQQVALLQQGDAVIGAGW
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCEEEECCC
DGRVKALQRDGGTIEFSTEQAIVKPDLWILPKGGNSELGARFLAFIDNPERQAKFATCIG
CCHHHHEECCCCEEEEECCCEEECCCEEEEECCCCCHHHHEEEEEECCCHHHHHHHHHHH
YAPALRKAYDLLPADQKFTVDPNNLKGVVVWNDEYWAKNARDVTARFNEWLTK
HHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA