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The map label for this gene is ypdF [C]

Identifier: 13488310

GI number: 13488310

Start: 331951

End: 333090

Strand: Direct

Name: ypdF [C]

Synonym: mlr9375

Alternate gene names: 13488310

Gene position: 331951-333090 (Clockwise)

Preceding gene: 13488309

Following gene: 13488311

Centisome position: 94.33

GC content: 56.67

Gene sequence:

>1140_bases
ATGGCGTTTTCGCCTCAAGAATATCGAGAAAGGCTGGCAAAGGTCCAAAACGCCATTCAACAGCGCGGGATGGTTGGCCT
GCTCGTGCATTCGCCGCATAATATCTGCTATCTCACCGGCTATCACACCTCGGGCTTTTTCGCTTACCAGGTCCTGTTCG
TCCCCGCCGACGGCGAGCCGCTGTTATTGGTCCGTGAACTGGAACGGACCAATGCTGACGAGTATTCATGGCTGGCTCTC
GACCGGCAGGCCGTTTATCTCGACAACGAAGATCCGGCTTCCGTGACGGGTCGGTGGTTGGCTGAACTTGGATGGACGGC
AGCCAGCGACCCAATCGGTGTCGAAAAAACCTGCTTCAATTTGGCAGTAAGAGACTACGAGGAGCTTTGCCATGCTGCGA
GGCCGAATAAAGTAGTCGATGGGTCAGGTATCGTCGGTCGCGTGCGGCTCATCAAATCGTCGCAGGAGATCGCTTATGCG
CGTCGAGCTGCCGAAATAACCGACATTGCGATGCGTACAGGACTTGAGGCCCTCGCCGTCGGGAAAGAAGAACTCGAAAT
CGCAGCGGCGATCCAGGAACAACAAGTCCTAGGCGGTTCCGAGTACACAAGCCTGCCGAACTACCTTTCATCTGGTTATA
GAATGAGGATCGGTCATGCCACGCCGACCGAGAAGGTGATCGAGGCCGGCGACCTCCTCAAATTCGAGATCACCAGTTGC
GTGAAGCGTTACAGCGCAGCGATGATGCGCACTGCGGTGATGGGCGCGCCGAGTGCCGAAATTGCTCAGGCCGCTGATCT
GCTGATAAGCTGCCAGGACCGTGCCTTCAGCATCATGAAGCCAGGCGCAATTGCTGGCGAAGTCGACGCGGCCGTACGTC
AACCGGTCTTAGAGGCAGGACTTCGGAAAACCTATTATCCGCGTGTTGGCTATTCCTTGGGCATCGGCTTCCCCCCCGTT
TCCGGTGAGTGGGAAGTATGCGACTTCATGGCAGGCGATACTTGGCTGCTCCAGGCGGGGATGATCTTTCACATGCTCGT
CAATGCCAACGGCATCTCCTTCAGCGAGACTATTCTGGTGACGGAAACGGGTTCGGAACGCCTGACTTCCCTGCCGCGGG
AGCTGTACATTGCCCAATAA

Upstream 100 bases:

>100_bases
TGACAAGAAAATAAAGTCATGTGCCCATAGGCGGCATCAAGGCCCGTGATCGACACAGCGCCATACTTAGAGAGAAGATA
AAGCCGTGACTGGACGGAAT

Downstream 100 bases:

>100_bases
CCCCACCACGTCGACCAGCGCCACTTCCGGCCCGAATTCCAATCTTCGGAAGGGCGAGGCTGGCGGGCTGCTGATCACGA
ACATTGCGGAACTAACACCC

Product: prolidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MAFSPQEYRERLAKVQNAIQQRGMVGLLVHSPHNICYLTGYHTSGFFAYQVLFVPADGEPLLLVRELERTNADEYSWLAL
DRQAVYLDNEDPASVTGRWLAELGWTAASDPIGVEKTCFNLAVRDYEELCHAARPNKVVDGSGIVGRVRLIKSSQEIAYA
RRAAEITDIAMRTGLEALAVGKEELEIAAAIQEQQVLGGSEYTSLPNYLSSGYRMRIGHATPTEKVIEAGDLLKFEITSC
VKRYSAAMMRTAVMGAPSAEIAQAADLLISCQDRAFSIMKPGAIAGEVDAAVRQPVLEAGLRKTYYPRVGYSLGIGFPPV
SGEWEVCDFMAGDTWLLQAGMIFHMLVNANGISFSETILVTETGSERLTSLPRELYIAQ

Sequences:

>Translated_379_residues
MAFSPQEYRERLAKVQNAIQQRGMVGLLVHSPHNICYLTGYHTSGFFAYQVLFVPADGEPLLLVRELERTNADEYSWLAL
DRQAVYLDNEDPASVTGRWLAELGWTAASDPIGVEKTCFNLAVRDYEELCHAARPNKVVDGSGIVGRVRLIKSSQEIAYA
RRAAEITDIAMRTGLEALAVGKEELEIAAAIQEQQVLGGSEYTSLPNYLSSGYRMRIGHATPTEKVIEAGDLLKFEITSC
VKRYSAAMMRTAVMGAPSAEIAQAADLLISCQDRAFSIMKPGAIAGEVDAAVRQPVLEAGLRKTYYPRVGYSLGIGFPPV
SGEWEVCDFMAGDTWLLQAGMIFHMLVNANGISFSETILVTETGSERLTSLPRELYIAQ
>Mature_378_residues
AFSPQEYRERLAKVQNAIQQRGMVGLLVHSPHNICYLTGYHTSGFFAYQVLFVPADGEPLLLVRELERTNADEYSWLALD
RQAVYLDNEDPASVTGRWLAELGWTAASDPIGVEKTCFNLAVRDYEELCHAARPNKVVDGSGIVGRVRLIKSSQEIAYAR
RAAEITDIAMRTGLEALAVGKEELEIAAAIQEQQVLGGSEYTSLPNYLSSGYRMRIGHATPTEKVIEAGDLLKFEITSCV
KRYSAAMMRTAVMGAPSAEIAQAADLLISCQDRAFSIMKPGAIAGEVDAAVRQPVLEAGLRKTYYPRVGYSLGIGFPPVS
GEWEVCDFMAGDTWLLQAGMIFHMLVNANGISFSETILVTETGSERLTSLPRELYIAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=240, Percent_Identity=25.8333333333333, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 41600; Mature: 41469

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSPQEYRERLAKVQNAIQQRGMVGLLVHSPHNICYLTGYHTSGFFAYQVLFVPADGEP
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCC
LLLVRELERTNADEYSWLALDRQAVYLDNEDPASVTGRWLAELGWTAASDPIGVEKTCFN
EEEEEEHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
LAVRDYEELCHAARPNKVVDGSGIVGRVRLIKSSQEIAYARRAAEITDIAMRTGLEALAV
HHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHC
GKEELEIAAAIQEQQVLGGSEYTSLPNYLSSGYRMRIGHATPTEKVIEAGDLLKFEITSC
CHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCEEEECCCCCHHHHHHCCCEEEHHHHHH
VKRYSAAMMRTAVMGAPSAEIAQAADLLISCQDRAFSIMKPGAIAGEVDAAVRQPVLEAG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
LRKTYYPRVGYSLGIGFPPVSGEWEVCDFMAGDTWLLQAGMIFHMLVNANGISFSETILV
HHHCCCCCCCCEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
TETGSERLTSLPRELYIAQ
EECCCHHHHHCCHHHEECC
>Mature Secondary Structure 
AFSPQEYRERLAKVQNAIQQRGMVGLLVHSPHNICYLTGYHTSGFFAYQVLFVPADGEP
CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCC
LLLVRELERTNADEYSWLALDRQAVYLDNEDPASVTGRWLAELGWTAASDPIGVEKTCFN
EEEEEEHHHCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
LAVRDYEELCHAARPNKVVDGSGIVGRVRLIKSSQEIAYARRAAEITDIAMRTGLEALAV
HHHHHHHHHHHHCCCCCEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHC
GKEELEIAAAIQEQQVLGGSEYTSLPNYLSSGYRMRIGHATPTEKVIEAGDLLKFEITSC
CHHHHHHHHHHHHHHHCCCCHHHCCCHHHCCCCEEEECCCCCHHHHHHCCCEEEHHHHHH
VKRYSAAMMRTAVMGAPSAEIAQAADLLISCQDRAFSIMKPGAIAGEVDAAVRQPVLEAG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
LRKTYYPRVGYSLGIGFPPVSGEWEVCDFMAGDTWLLQAGMIFHMLVNANGISFSETILV
HHHCCCCCCCCEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
TETGSERLTSLPRELYIAQ
EECCCHHHHHCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]