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The map label for this gene is xerD [C]

Identifier: 13488299

GI number: 13488299

Start: 283344

End: 284594

Strand: Direct

Name: xerD [C]

Synonym: mlr9321

Alternate gene names: 13488299

Gene position: 283344-284594 (Clockwise)

Preceding gene: 13488298

Following gene: 13488300

Centisome position: 80.52

GC content: 55.56

Gene sequence:

>1251_bases
ATGGTTTACGTGATGAAGAACAGAGCCCCGCTACCCATCTCGCCGATGGGAGGAGTTCTGGAAGCTTACGCAGTGGATTA
CGAGTCCGCTCTCTGCGACGGTCGGTATGCCAAAAGTACCAGGCGCGGATATCTGTGTTGCGTCGGACATTTTGCCAGTT
GGATCGCCGCGGAGCAGATCCCATTAGAGGAGATTGATGAATCCTCCGGCCGCCGTTTTATAGAAGAACACCTGCCGCGC
TGCGAATGTCCACCTCCACGGATTATATGGCGTAACACCAATAACGCAGCAATATCACTACTTTACCGAGTTATTAGGTC
ACGCCGCCTTCATTGTGCTCCCGATGAAGTGACCGCTATCGCGGAGGAGATGATAAAATTCGACCAGTACATGGACAATG
TAAGGGGACTTGCCTCAAGGACGCGCCATCAACGGGTTCTCCTTCTCACGCGTTTTCTTACTGCACGCTTCGGCAGGGGC
AGCGTAGTAGCTTCCGCGATAACTGCCGCTGACATTAGAAAGTTCGTTCTTGATGTGCCGACTGGCTCTCGGAGCACCGG
CCTTGCGCGTGTAAAGGGCCAGGCACTCTCCTGTTATCTTCGGTTTCGAGCGCTTGCAGGCGATCCGGTTGAGTTGTTAG
CGGGAACGATCCCGCGGCCGGCCAACAGACGACTTGCAAAGCTCGCTGTCACACTTTCAAAATCGGAAATCACCGATCTT
CTCGCCTCGTCTGATGGATCTCTACCATCCGCGCGGCGGGACCATGCGATGTTGCGCTGCCTGGCCGACCTCGGACTGAG
GGGATGCGAAGTTCTAAAACTTACGCTGAGCGATATCGACTGGCGAAACGGCACGTTGCGAATAGTAAAGGGCAAAAGTC
GCCGTACGGACATGCTTCCATTACCATTCGAGACGGGTCGTGCCATCGCGGAATACTTATCGAAAGAGCGTCCGGCGACA
TCAAACCGCGCGCTATTTGTTCGGTGCAAGGCGCCGTTTGATAAGCCGCTCAGCACAGTGGTGGTGCATAATATCGTCAA
GGCAGCCTATCGCCGCTGCGGTTGGTCCCACACGCGACCTCATATTCTCCGTCACAGCGTCGCCAGCCAACTTCTTCGGG
ACGGAGCCCCTCTGAAGGAAATCTCCGATGTCCTTCGACATCGGAGCCTGAATACATCGATGGTGTATTTGAAGGTTGAC
GCGGATCGCCTAGCCGCAGTCGCACTCCCGTGGCCGGGGAGGGTTGTCTGA

Upstream 100 bases:

>100_bases
TGGCGCAAGTATTTTAGTCGTTCTGACACACTTTTTTCCGCGCGCACTGCACATAATTTTGGGATCTGCTGTGAGGGCTT
TCAACTAACAGGAGCCCTAT

Downstream 100 bases:

>100_bases
TGTGCAATGAAACCTGGCAATCTAGAGCCGAAGAATATATCGACGATAGCCGTCGTCTCGGCTACGCCTTGACCACCACA
AGTGCCTACCTGCTGTCATT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MVYVMKNRAPLPISPMGGVLEAYAVDYESALCDGRYAKSTRRGYLCCVGHFASWIAAEQIPLEEIDESSGRRFIEEHLPR
CECPPPRIIWRNTNNAAISLLYRVIRSRRLHCAPDEVTAIAEEMIKFDQYMDNVRGLASRTRHQRVLLLTRFLTARFGRG
SVVASAITAADIRKFVLDVPTGSRSTGLARVKGQALSCYLRFRALAGDPVELLAGTIPRPANRRLAKLAVTLSKSEITDL
LASSDGSLPSARRDHAMLRCLADLGLRGCEVLKLTLSDIDWRNGTLRIVKGKSRRTDMLPLPFETGRAIAEYLSKERPAT
SNRALFVRCKAPFDKPLSTVVVHNIVKAAYRRCGWSHTRPHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVD
ADRLAAVALPWPGRVV

Sequences:

>Translated_416_residues
MVYVMKNRAPLPISPMGGVLEAYAVDYESALCDGRYAKSTRRGYLCCVGHFASWIAAEQIPLEEIDESSGRRFIEEHLPR
CECPPPRIIWRNTNNAAISLLYRVIRSRRLHCAPDEVTAIAEEMIKFDQYMDNVRGLASRTRHQRVLLLTRFLTARFGRG
SVVASAITAADIRKFVLDVPTGSRSTGLARVKGQALSCYLRFRALAGDPVELLAGTIPRPANRRLAKLAVTLSKSEITDL
LASSDGSLPSARRDHAMLRCLADLGLRGCEVLKLTLSDIDWRNGTLRIVKGKSRRTDMLPLPFETGRAIAEYLSKERPAT
SNRALFVRCKAPFDKPLSTVVVHNIVKAAYRRCGWSHTRPHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVD
ADRLAAVALPWPGRVV
>Mature_416_residues
MVYVMKNRAPLPISPMGGVLEAYAVDYESALCDGRYAKSTRRGYLCCVGHFASWIAAEQIPLEEIDESSGRRFIEEHLPR
CECPPPRIIWRNTNNAAISLLYRVIRSRRLHCAPDEVTAIAEEMIKFDQYMDNVRGLASRTRHQRVLLLTRFLTARFGRG
SVVASAITAADIRKFVLDVPTGSRSTGLARVKGQALSCYLRFRALAGDPVELLAGTIPRPANRRLAKLAVTLSKSEITDL
LASSDGSLPSARRDHAMLRCLADLGLRGCEVLKLTLSDIDWRNGTLRIVKGKSRRTDMLPLPFETGRAIAEYLSKERPAT
SNRALFVRCKAPFDKPLSTVVVHNIVKAAYRRCGWSHTRPHILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVD
ADRLAAVALPWPGRVV

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=300, Percent_Identity=28.6666666666667, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46418; Mature: 46418

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYVMKNRAPLPISPMGGVLEAYAVDYESALCDGRYAKSTRRGYLCCVGHFASWIAAEQI
CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEHHHHHHHHHHHCC
PLEEIDESSGRRFIEEHLPRCECPPPRIIWRNTNNAAISLLYRVIRSRRLHCAPDEVTAI
CHHHHCCCCCHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHH
AEEMIKFDQYMDNVRGLASRTRHQRVLLLTRFLTARFGRGSVVASAITAADIRKFVLDVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC
TGSRSTGLARVKGQALSCYLRFRALAGDPVELLAGTIPRPANRRLAKLAVTLSKSEITDL
CCCCCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LASSDGSLPSARRDHAMLRCLADLGLRGCEVLKLTLSDIDWRNGTLRIVKGKSRRTDMLP
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCEEEEEECCCCCCCCCC
LPFETGRAIAEYLSKERPATSNRALFVRCKAPFDKPLSTVVVHNIVKAAYRRCGWSHTRP
CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
HILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLAAVALPWPGRVV
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCC
>Mature Secondary Structure
MVYVMKNRAPLPISPMGGVLEAYAVDYESALCDGRYAKSTRRGYLCCVGHFASWIAAEQI
CEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEHHHHHHHHHHHCC
PLEEIDESSGRRFIEEHLPRCECPPPRIIWRNTNNAAISLLYRVIRSRRLHCAPDEVTAI
CHHHHCCCCCHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHH
AEEMIKFDQYMDNVRGLASRTRHQRVLLLTRFLTARFGRGSVVASAITAADIRKFVLDVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECC
TGSRSTGLARVKGQALSCYLRFRALAGDPVELLAGTIPRPANRRLAKLAVTLSKSEITDL
CCCCCCCHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LASSDGSLPSARRDHAMLRCLADLGLRGCEVLKLTLSDIDWRNGTLRIVKGKSRRTDMLP
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCCEEEEEECCCCCCCCCC
LPFETGRAIAEYLSKERPATSNRALFVRCKAPFDKPLSTVVVHNIVKAAYRRCGWSHTRP
CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
HILRHSVASQLLRDGAPLKEISDVLRHRSLNTSMVYLKVDADRLAAVALPWPGRVV
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]