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The map label for this gene is ypdF [C]

Identifier: 13488181

GI number: 13488181

Start: 12307

End: 13443

Strand: Direct

Name: ypdF [C]

Synonym: mlr9012

Alternate gene names: 13488181

Gene position: 12307-13443 (Clockwise)

Preceding gene: 13488342

Following gene: 13488182

Centisome position: 3.5

GC content: 57.96

Gene sequence:

>1137_bases
ATGACCGCGAACCGGCAAGCGTTTACAACTGAGGAATTTAAGACGCGCGTGGCGCGAGTGCAGTCAGAAATGTCGGTGCG
GGGAATCGATATTCTCTTGCTGCACGCTCCAGAGAATATCTACTACCTTACCGGCCACCAGACATCGGGTTATTTCGCCT
ACCAGACCGTCGTTCTCGCTCAGGCCGGTGACCCGCAACTACTGTTGCGCTTTCTGGAAAAGGGGAATGTCGACGAATAT
TCGTGGCTCCCGGATGCCTCCACTTGGAAGGAAGGCGATGACGTTGTGGAAAAAACGCTCGCCCTGGTGCGCGGTTTCGG
TGCCGCCGGCAAACGCATCGGACTGGAGAAAAGGTCCTGGTTTTTGACGTCTGCAATCGCAGATGCGCTGACCAATGGAC
TTAGCGATGCCACGATTGTGGATGCGAGCTTGCTTGTCGATCGCGTTCGCGTGATCAAATCACCCGCCGAGGTCGGCTAC
ATCCGACGTGCAGCACAGATCGCCGAAATCGAGCAGCAGGTCGCGTTTGCGACCATTTGCGATGGAGCCACGGAGGCCCA
GGTTGCTGCTGCCGTTTTCGCGGCAGGCGTGAACGCCGGCTGCGAATATACCGGCCTGCCACACCACATCATGTCCGGAT
ACCGCTATAATGTGTGCCACGCGAACTGGAGTCCGAAGATCATCCGCCGTGGCGAATTGGTGCTCTTCGAGTTCTACGGA
TGTCTCGAACGCTATCATGCAACGCAGATGCGTACCGTGGCCATCGGCCACGCTTCGGACGAGGTAACCCGGGCCGCCGA
CATCGTTGTTGCCGCTCAGGATGCCGGCATTGCTGCTATGAAGCCCGGAGCTTCGGCCCGCGAAGTCGATGCGTTGGTGC
GGCAGCCAATCCGCAAGATCCGGCCCGAGTATTACAATCGAACCGGCTACTCGACCGGCATCGGATTCCCGCCGAAGACT
GCAGAGTGGGAAGCGCTCGACTTCAATGAACAGGAAGATTGGGAACTAAAGGAAGGCATGGCCTTCCACATGCTGGCGCT
GGCCTGTGGGTTTGGCATCAGTGAAACTGTCGTCGTAACGAGCAATGGGGTTGAGCGCCTCACCGGTTCGAACGGGCGTG
CACTTCTGATCAAGTGA

Upstream 100 bases:

>100_bases
CAGGACGGCACCCTCCCGCCGACTACACCTCGTTCCGCGAAGGCCGCCACTTTCGGCTCTATATTTCGACACTTTAAATG
CACATACATGGGATGAGCAC

Downstream 100 bases:

>100_bases
TCAGAAACTAAGAGGGGTCCTAACAAAGGGAGTAAAGAGCATGACAGACAAAATCTTCAATATCCGCGTTGACCGCAGAA
GCTTTCTTGCTGGCTCGGCT

Product: hydrolase/peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MTANRQAFTTEEFKTRVARVQSEMSVRGIDILLLHAPENIYYLTGHQTSGYFAYQTVVLAQAGDPQLLLRFLEKGNVDEY
SWLPDASTWKEGDDVVEKTLALVRGFGAAGKRIGLEKRSWFLTSAIADALTNGLSDATIVDASLLVDRVRVIKSPAEVGY
IRRAAQIAEIEQQVAFATICDGATEAQVAAAVFAAGVNAGCEYTGLPHHIMSGYRYNVCHANWSPKIIRRGELVLFEFYG
CLERYHATQMRTVAIGHASDEVTRAADIVVAAQDAGIAAMKPGASAREVDALVRQPIRKIRPEYYNRTGYSTGIGFPPKT
AEWEALDFNEQEDWELKEGMAFHMLALACGFGISETVVVTSNGVERLTGSNGRALLIK

Sequences:

>Translated_378_residues
MTANRQAFTTEEFKTRVARVQSEMSVRGIDILLLHAPENIYYLTGHQTSGYFAYQTVVLAQAGDPQLLLRFLEKGNVDEY
SWLPDASTWKEGDDVVEKTLALVRGFGAAGKRIGLEKRSWFLTSAIADALTNGLSDATIVDASLLVDRVRVIKSPAEVGY
IRRAAQIAEIEQQVAFATICDGATEAQVAAAVFAAGVNAGCEYTGLPHHIMSGYRYNVCHANWSPKIIRRGELVLFEFYG
CLERYHATQMRTVAIGHASDEVTRAADIVVAAQDAGIAAMKPGASAREVDALVRQPIRKIRPEYYNRTGYSTGIGFPPKT
AEWEALDFNEQEDWELKEGMAFHMLALACGFGISETVVVTSNGVERLTGSNGRALLIK
>Mature_377_residues
TANRQAFTTEEFKTRVARVQSEMSVRGIDILLLHAPENIYYLTGHQTSGYFAYQTVVLAQAGDPQLLLRFLEKGNVDEYS
WLPDASTWKEGDDVVEKTLALVRGFGAAGKRIGLEKRSWFLTSAIADALTNGLSDATIVDASLLVDRVRVIKSPAEVGYI
RRAAQIAEIEQQVAFATICDGATEAQVAAAVFAAGVNAGCEYTGLPHHIMSGYRYNVCHANWSPKIIRRGELVLFEFYGC
LERYHATQMRTVAIGHASDEVTRAADIVVAAQDAGIAAMKPGASAREVDALVRQPIRKIRPEYYNRTGYSTGIGFPPKTA
EWEALDFNEQEDWELKEGMAFHMLALACGFGISETVVVTSNGVERLTGSNGRALLIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24 family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=253, Percent_Identity=28.0632411067194, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 41446; Mature: 41315

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANRQAFTTEEFKTRVARVQSEMSVRGIDILLLHAPENIYYLTGHQTSGYFAYQTVVLA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCEEEEEEEEEE
QAGDPQLLLRFLEKGNVDEYSWLPDASTWKEGDDVVEKTLALVRGFGAAGKRIGLEKRSW
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH
FLTSAIADALTNGLSDATIVDASLLVDRVRVIKSPAEVGYIRRAAQIAEIEQQVAFATIC
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
DGATEAQVAAAVFAAGVNAGCEYTGLPHHIMSGYRYNVCHANWSPKIIRRGELVLFEFYG
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCEEECCCEEEHHHHH
CLERYHATQMRTVAIGHASDEVTRAADIVVAAQDAGIAAMKPGASAREVDALVRQPIRKI
HHHHHHHHHEEEEEEECCCHHHHHHHEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHH
RPEYYNRTGYSTGIGFPPKTAEWEALDFNEQEDWELKEGMAFHMLALACGFGISETVVVT
CHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCEEEEE
SNGVERLTGSNGRALLIK
CCCHHHHCCCCCCEEEEC
>Mature Secondary Structure 
TANRQAFTTEEFKTRVARVQSEMSVRGIDILLLHAPENIYYLTGHQTSGYFAYQTVVLA
CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCCCEEEEEEEEEE
QAGDPQLLLRFLEKGNVDEYSWLPDASTWKEGDDVVEKTLALVRGFGAAGKRIGLEKRSW
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHH
FLTSAIADALTNGLSDATIVDASLLVDRVRVIKSPAEVGYIRRAAQIAEIEQQVAFATIC
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
DGATEAQVAAAVFAAGVNAGCEYTGLPHHIMSGYRYNVCHANWSPKIIRRGELVLFEFYG
CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCEEECCCEEEHHHHH
CLERYHATQMRTVAIGHASDEVTRAADIVVAAQDAGIAAMKPGASAREVDALVRQPIRKI
HHHHHHHHHEEEEEEECCCHHHHHHHEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHH
RPEYYNRTGYSTGIGFPPKTAEWEALDFNEQEDWELKEGMAFHMLALACGFGISETVVVT
CHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCEEEEE
SNGVERLTGSNGRALLIK
CCCHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]