Click here to switch to the map view.

The map label for this gene is 13488168

Identifier: 13488168

GI number: 13488168

Start: 320575

End: 322227

Strand: Reverse

Name: 13488168

Synonym: mll9368

Alternate gene names: NA

Gene position: 322227-320575 (Counterclockwise)

Preceding gene: 13488341

Following gene: 13488167

Centisome position: 91.56

GC content: 65.58

Gene sequence:

>1653_bases
TTGCCGAACCGATTGCACAACCGAAAAGCGGTACCCGCCCCGTCGCATTCCGACGAAGCCTGGTCGGCGGCACGTCGTCT
CGCTCGCGAGCTCGACAGGGTTCTCGACGGTTCGGGGCCACGACGCGCGGCGATCAACCGGGCTGCGGCCGAGCTGCGCC
TCTCGACCCGGCAGGTTTACAATCTGCTCGCGCGCTACCGCATCGATCGGACCGTGACGTCGCTGCTGCGCAAGTTGGGT
GGCAGCCGCAAGAAGCGCCTTGATCAAGGCATCGAGGCGATCATGGCGACAACACTACGAGAGCAGTGGCTCGTGCTGGA
GGCTCCGCCGCTCGCTCCCGTCGTGACCGAAATCCGGGCTCGCTGCGAGGAGGCCGGCCTGGCCGCCCCGTCCTATCTCA
CCGTCGCCCGCCGAATACCGGGGCTGTTCAGCCCCGAGGAGATCGCGAGGAAACGGTCCGCCAATCCGAAGCATCTCCAG
CGACTCAAACCTCGGCCAGGATACATCCAAGCGGCGCGCCCGCTCGATGTCTGCCAGATTGATCACACGCCTACCGACAT
CAATTTCGTGGAGGTTATCGACGGCGGCGGAACCTTCATCGGCCGGGCATATCTCACGATCGTCACCGACGTGGCCACCC
GCTGCATTCTTGGCTTCTGCCTCACGCTCGAGAAACCGTCGGCGCTGTCGGTCGCACTCTGCCTGGCGCATGCCATGTGT
CCAAGGGAGGCATGGTTGGCCGCACGCGGCATCGAGCATGGATGGCCGATGCTCGGTCGACCACGGTCGCTCGTCACCGA
CTCCGCAAAGGAGTTCAAAGGGCATGCCTTCCAGCGCGGGTGCGAGGACCACGGCATTCGGATCCGCTACCGGGATCGTG
GCCGCGTCCACCAGGGCGGAGTGGTCGAAAGGCTGCTCGGGAAGCTCAACGCCGTTCTTGCGACGCAGCCCGGCTCGACG
GGCAGATCCGTGGCGAACCGCGACCAATATCCCGCGCAACAGCGAGCCCGTCTCAGCTTCGCGGATCTCGAGCGATGCGT
CGCGCTCGCGGTGATCGACCACAACCTTCAGGAAAACGCGAGGACATTGAAGGTGCCGGCCACAGAGTGGGAGCGGCAGG
CGCATGATTTCTCCCGCTTTGACGATGATCCTGTGCGTGTCCTGCTGGCCTTCCTGCCCGGCGCAGAGCGACGCCTCTCG
CCGCAGGGGATCAGCATGTTCGCGCAGGACTACTACTCGCCGTGGCTGGGCGGCCTGGTTCCGCAGCGAGACCGGCTGGG
CAGGCTCGAAGTGCGGTACGACCCTCGCGATATCAGTCACATCTACATCCGGGATCCGGAGACCAGAGAATTTCGATCTG
TGGAGCGGCGCGACGGCATGCTTGCTCCGATAACGTTGTGGGAGCACGAGGCCGACCGCCTGCAGCGACGCGCCGCGAAC
GCGCGCACGGACGTCGAGAAGGTGACGCTGCGCCGCCGGATCGCGGAGATTGCCGGCGGAACGAAGCCGTCGAAGGCGGA
ACTTCGTAATGCTGTGCGCAGAAGTCATGCCGCAGACGCCCCAAAGCCCTATGACGCGATGCGGCCGGCGGCGCCGGCAC
CCGCCGATCATCCCGCTCGCCCAAAGCGTCGCCTGCCGGTGGAGGATTGGTAA

Upstream 100 bases:

>100_bases
TTTACTTCCCGATTTCAAATGCCGGAATGTCATGTGGCGGTTAGGTTTGCACGCTATCGGAGGCGCAAATTTTCGCTAAC
GATTTCACTGAGCGCCCGAT

Downstream 100 bases:

>100_bases
GATGACTGATCATCTTCTCGATCACGTTCGCCCGCATATCGACCACAGCACGGAAGAGCGGATTGCGTATATCCAGACGC
CGCGATGGACTGATCGGCGA

Product: transposase

Products: NA

Alternate protein names: ORF 480 [H]

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MPNRLHNRKAVPAPSHSDEAWSAARRLARELDRVLDGSGPRRAAINRAAAELRLSTRQVYNLLARYRIDRTVTSLLRKLG
GSRKKRLDQGIEAIMATTLREQWLVLEAPPLAPVVTEIRARCEEAGLAAPSYLTVARRIPGLFSPEEIARKRSANPKHLQ
RLKPRPGYIQAARPLDVCQIDHTPTDINFVEVIDGGGTFIGRAYLTIVTDVATRCILGFCLTLEKPSALSVALCLAHAMC
PREAWLAARGIEHGWPMLGRPRSLVTDSAKEFKGHAFQRGCEDHGIRIRYRDRGRVHQGGVVERLLGKLNAVLATQPGST
GRSVANRDQYPAQQRARLSFADLERCVALAVIDHNLQENARTLKVPATEWERQAHDFSRFDDDPVRVLLAFLPGAERRLS
PQGISMFAQDYYSPWLGGLVPQRDRLGRLEVRYDPRDISHIYIRDPETREFRSVERRDGMLAPITLWEHEADRLQRRAAN
ARTDVEKVTLRRRIAEIAGGTKPSKAELRNAVRRSHAADAPKPYDAMRPAAPAPADHPARPKRRLPVEDW

Sequences:

>Translated_550_residues
MPNRLHNRKAVPAPSHSDEAWSAARRLARELDRVLDGSGPRRAAINRAAAELRLSTRQVYNLLARYRIDRTVTSLLRKLG
GSRKKRLDQGIEAIMATTLREQWLVLEAPPLAPVVTEIRARCEEAGLAAPSYLTVARRIPGLFSPEEIARKRSANPKHLQ
RLKPRPGYIQAARPLDVCQIDHTPTDINFVEVIDGGGTFIGRAYLTIVTDVATRCILGFCLTLEKPSALSVALCLAHAMC
PREAWLAARGIEHGWPMLGRPRSLVTDSAKEFKGHAFQRGCEDHGIRIRYRDRGRVHQGGVVERLLGKLNAVLATQPGST
GRSVANRDQYPAQQRARLSFADLERCVALAVIDHNLQENARTLKVPATEWERQAHDFSRFDDDPVRVLLAFLPGAERRLS
PQGISMFAQDYYSPWLGGLVPQRDRLGRLEVRYDPRDISHIYIRDPETREFRSVERRDGMLAPITLWEHEADRLQRRAAN
ARTDVEKVTLRRRIAEIAGGTKPSKAELRNAVRRSHAADAPKPYDAMRPAAPAPADHPARPKRRLPVEDW
>Mature_549_residues
PNRLHNRKAVPAPSHSDEAWSAARRLARELDRVLDGSGPRRAAINRAAAELRLSTRQVYNLLARYRIDRTVTSLLRKLGG
SRKKRLDQGIEAIMATTLREQWLVLEAPPLAPVVTEIRARCEEAGLAAPSYLTVARRIPGLFSPEEIARKRSANPKHLQR
LKPRPGYIQAARPLDVCQIDHTPTDINFVEVIDGGGTFIGRAYLTIVTDVATRCILGFCLTLEKPSALSVALCLAHAMCP
REAWLAARGIEHGWPMLGRPRSLVTDSAKEFKGHAFQRGCEDHGIRIRYRDRGRVHQGGVVERLLGKLNAVLATQPGSTG
RSVANRDQYPAQQRARLSFADLERCVALAVIDHNLQENARTLKVPATEWERQAHDFSRFDDDPVRVLLAFLPGAERRLSP
QGISMFAQDYYSPWLGGLVPQRDRLGRLEVRYDPRDISHIYIRDPETREFRSVERRDGMLAPITLWEHEADRLQRRAANA
RTDVEKVTLRRRIAEIAGGTKPSKAELRNAVRRSHAADAPKPYDAMRPAAPAPADHPARPKRRLPVEDW

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR015378
- InterPro:   IPR009004 [H]

Pfam domain/function: PF09299 Mu-transpos_C; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 61878; Mature: 61746

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNRLHNRKAVPAPSHSDEAWSAARRLARELDRVLDGSGPRRAAINRAAAELRLSTRQVY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
NLLARYRIDRTVTSLLRKLGGSRKKRLDQGIEAIMATTLREQWLVLEAPPLAPVVTEIRA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHH
RCEEAGLAAPSYLTVARRIPGLFSPEEIARKRSANPKHLQRLKPRPGYIQAARPLDVCQI
HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCCCCEECCCCCCEEEE
DHTPTDINFVEVIDGGGTFIGRAYLTIVTDVATRCILGFCLTLEKPSALSVALCLAHAMC
CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
PREAWLAARGIEHGWPMLGRPRSLVTDSAKEFKGHAFQRGCEDHGIRIRYRDRGRVHQGG
CHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHCCHHHHCCCCCCCEEEEECCCCCCCCCH
VVERLLGKLNAVLATQPGSTGRSVANRDQYPAQQRARLSFADLERCVALAVIDHNLQENA
HHHHHHHHHHHHEEECCCCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCHHCCC
RTLKVPATEWERQAHDFSRFDDDPVRVLLAFLPGAERRLSPQGISMFAQDYYSPWLGGLV
CEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCC
PQRDRLGRLEVRYDPRDISHIYIRDPETREFRSVERRDGMLAPITLWEHEADRLQRRAAN
CCCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
ARTDVEKVTLRRRIAEIAGGTKPSKAELRNAVRRSHAADAPKPYDAMRPAAPAPADHPAR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCC
PKRRLPVEDW
CCCCCCCCCC
>Mature Secondary Structure 
PNRLHNRKAVPAPSHSDEAWSAARRLARELDRVLDGSGPRRAAINRAAAELRLSTRQVY
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
NLLARYRIDRTVTSLLRKLGGSRKKRLDQGIEAIMATTLREQWLVLEAPPLAPVVTEIRA
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHH
RCEEAGLAAPSYLTVARRIPGLFSPEEIARKRSANPKHLQRLKPRPGYIQAARPLDVCQI
HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCCCCEECCCCCCEEEE
DHTPTDINFVEVIDGGGTFIGRAYLTIVTDVATRCILGFCLTLEKPSALSVALCLAHAMC
CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
PREAWLAARGIEHGWPMLGRPRSLVTDSAKEFKGHAFQRGCEDHGIRIRYRDRGRVHQGG
CHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHCCHHHHCCCCCCCEEEEECCCCCCCCCH
VVERLLGKLNAVLATQPGSTGRSVANRDQYPAQQRARLSFADLERCVALAVIDHNLQENA
HHHHHHHHHHHHEEECCCCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCHHCCC
RTLKVPATEWERQAHDFSRFDDDPVRVLLAFLPGAERRLSPQGISMFAQDYYSPWLGGLV
CEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCC
PQRDRLGRLEVRYDPRDISHIYIRDPETREFRSVERRDGMLAPITLWEHEADRLQRRAAN
CCCCCCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
ARTDVEKVTLRRRIAEIAGGTKPSKAELRNAVRRSHAADAPKPYDAMRPAAPAPADHPAR
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCC
PKRRLPVEDW
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2170815 [H]