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The map label for this gene is scpB [H]

Identifier: 13488158

GI number: 13488158

Start: 303612

End: 304313

Strand: Reverse

Name: scpB [H]

Synonym: mll9345

Alternate gene names: 13488158

Gene position: 304313-303612 (Counterclockwise)

Preceding gene: 13488335

Following gene: 13488157

Centisome position: 86.47

GC content: 64.81

Gene sequence:

>702_bases
GTGAGACCGATGGTGGAGCAGGCGCGCGGGAGAAGGGCGAAGGAGCGATCAGATGACCACCTGTTCGATCGCGAATTGGA
TCACCTGCCGCCGGAGGTGCGTTGGCGCGAATGGATGAACCGCGTCGAAGCAACCATCTTCGCCGCCGGCGAACCGATCA
GCCGCGAGGTGCTTACCCGCATCGTCGGCAAGACCTGCAGCATCGACCTGCTGATCGACGACATCCGCGAGGAACTGCGC
GGCCGGCCCTACGATCTGGTCGCGGTCGCCGGCGGTTTTCGGCACCTGACCCGCCCGGCCTATGCCGACGCCATCCGTAT
GGCCGTCGGCTCCAGCGAACGCGCCGTCGACCTCACGCAATCCGAAGTGCTGGTTTTGATGTGCATCGCCTTCTTCCAGC
CGATCACGCGCGCCGAACTGTCGTCCTTCTTCGGCAAGGAGATCAGCCGCGACCTGATCGGCAATTTGCGCTCCTTCGGC
CTGATCGCCTCCGGCCCGCGCAGCCCGACGCCGGGCGCCCCCTATACCTATGTCACGACAAAGGCGTTCCTGCTGGAATT
CGGGCTTGAAACCTTGCGCGATCTCCCCGACTTCGAGGCGCTCGAGGATGCGGGGCTGCTGTCGAAGGAAAAGCTGCTCG
CGGGCGACATCATGCCGGGGTTTTTGGGCCCTGGCGAGAGTGGTGCCGACGCCGACGAATAG

Upstream 100 bases:

>100_bases
GCATGAGCGACCGCGGTATGCGCCGCCTGTTCGACCGGCTGGTCGAACTCGGCGCCGTGCGTGAGCTGTCCGGCCGCCCG
ACCTTCCGCATCTACGGGCT

Downstream 100 bases:

>100_bases
AGGGCCTGTGCCTGAGCCGGAGGCGACCGACCATCGTCACCGCAACTTCTCGAGCGATCGGACAGCAAGATCGATTTTCC
CTATGAGGTCCCTCAACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRPMVEQARGRRAKERSDDHLFDRELDHLPPEVRWREWMNRVEATIFAAGEPISREVLTRIVGKTCSIDLLIDDIREELR
GRPYDLVAVAGGFRHLTRPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRSFG
LIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPDFEALEDAGLLSKEKLLAGDIMPGFLGPGESGADADE

Sequences:

>Translated_233_residues
MRPMVEQARGRRAKERSDDHLFDRELDHLPPEVRWREWMNRVEATIFAAGEPISREVLTRIVGKTCSIDLLIDDIREELR
GRPYDLVAVAGGFRHLTRPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRSFG
LIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPDFEALEDAGLLSKEKLLAGDIMPGFLGPGESGADADE
>Mature_233_residues
MRPMVEQARGRRAKERSDDHLFDRELDHLPPEVRWREWMNRVEATIFAAGEPISREVLTRIVGKTCSIDLLIDDIREELR
GRPYDLVAVAGGFRHLTRPAYADAIRMAVGSSERAVDLTQSEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRSFG
LIASGPRSPTPGAPYTYVTTKAFLLEFGLETLRDLPDFEALEDAGLLSKEKLLAGDIMPGFLGPGESGADADE

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25911; Mature: 25911

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPMVEQARGRRAKERSDDHLFDRELDHLPPEVRWREWMNRVEATIFAAGEPISREVLTR
CCCHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IVGKTCSIDLLIDDIREELRGRPYDLVAVAGGFRHLTRPAYADAIRMAVGSSERAVDLTQ
HHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCCCEEHHHH
SEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRSFGLIASGPRSPTPGAPYTYVTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEHHHH
KAFLLEFGLETLRDLPDFEALEDAGLLSKEKLLAGDIMPGFLGPGESGADADE
HHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRPMVEQARGRRAKERSDDHLFDRELDHLPPEVRWREWMNRVEATIFAAGEPISREVLTR
CCCHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
IVGKTCSIDLLIDDIREELRGRPYDLVAVAGGFRHLTRPAYADAIRMAVGSSERAVDLTQ
HHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCCCEEHHHH
SEVLVLMCIAFFQPITRAELSSFFGKEISRDLIGNLRSFGLIASGPRSPTPGAPYTYVTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEHHHH
KAFLLEFGLETLRDLPDFEALEDAGLLSKEKLLAGDIMPGFLGPGESGADADE
HHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]