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The map label for this gene is xerD [C]

Identifier: 13488152

GI number: 13488152

Start: 291741

End: 292979

Strand: Reverse

Name: xerD [C]

Synonym: mll9331

Alternate gene names: 13488152

Gene position: 292979-291741 (Counterclockwise)

Preceding gene: 13488153

Following gene: 13488151

Centisome position: 83.25

GC content: 57.38

Gene sequence:

>1239_bases
ATGTCCATTCATAACAAACGAAGCAGTGCAGCCATCGCTGCCGCGCCCACCACCGATGAGATTCGCCGCATCTGGAGCGG
GGAGCGGCGGTTTGGTGCAGGAACGGCGGACAAATATCTGATATGTATCCAGCAGTTTCGTACCTATTGCAGCCAGCTGG
GACTGATCGAGCGAGAAGAACTGACCCTGGAAGGCGCTAATCGGTTCATCGGCTGGTATGCGCGGCGCCGGAGCCGGCCT
CGAAGATCCCACCAGAATTTCCGGAGTGCCCTGCGGTCGCTCGCCCGTGTCTACCACCGGATGGGAGTTGCTCCTCCCGA
CTGGCAACCACCAAGAGCGGTTCAACCTCCGCCTTCACCATTATTCGCGGAGTATGATGCGTATCTCGTGCAGCATTTGG
GTCTTGCTGAGCGTACGATCCACAAGCAACTGAGCCATCTTAGCAAATTTTACAATTACCTTGTCCGGGCAGGAAAGGAA
TGGTATTCGATACAACTGACCGATGTCGATGCATTTCTTGTTGGTTGCTCAACTCAATACTCTCGATCCTATGTCAGCAA
CATCGCCTCCACGGTACGTTGCTTTTACCGCTTCCTGCACTGGAGCGGTAAAAACCCGATCGATATCAGCGAAGCCATCA
TTGCGCCTATACAACGACCGTTCGAGCGTCCCAGGCGCGCTCTGCCTTGGGAGGATGTGCAGCGGCTGCTGAATGCGGTG
GATCGGTCGACGCCGGTGGGACTTCGCGATTACGCAATCCTGTTGATGCTAAGCACCTATGGCCTTGGCGCCGCCGAGGT
CAATCGCCTTCAATTCCAGGCCATTGACTGGAACGCCAACACTTTGGCGGTGTATCGCCCGAAGACGGGGGTCTCATTTA
CGTTGCCGTTGTTGCCGCCGATCAGCGAGGCATTGGCGCATTATCTTCGTTATGGCCGGCCGGTTGACACCCCCACGCGT
CATATCTTCGTGCAGATGCAGGTACCCTTCGAACCGTACGTCCGTTCGAGTGCGATCGGCCACATTGTGGCGAAGCATGC
GAGGAAGGCGGGGATCAACGCACCCTCCCTGGGCAGTCATGTCCTGCGGCACAGCCATGCGGGACGTCAGATCGATTTAG
GCACTCGACCGCAGGTATTGTCCGAACTGCTCGGCCACAGCGATCCGGAGTCGGTTTCCGCCTATGTGCGGATCGCCACG
GATTCCCTTCGTGAGATTGCCCTACCGGTGCCCGCATGA

Upstream 100 bases:

>100_bases
AAAAGGTTTCGATCGTGCCGCGGACAACCATTACCAACACGATGCGGGGCCTGATCTCACCGTCGCGGCTGGCTACAGTT
TCACCAATCGAGGTGAAGCC

Downstream 100 bases:

>100_bases
CCACAATCGTCACCTTGATCGAACTGAAGAACGACGCCGAGAGCTTCGTGACGTTCAAGCGAGCGATGGGCTACCGCTAT
CAACGCGGTGCCTACGAGAT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSIHNKRSSAAIAAAPTTDEIRRIWSGERRFGAGTADKYLICIQQFRTYCSQLGLIEREELTLEGANRFIGWYARRRSRP
RRSHQNFRSALRSLARVYHRMGVAPPDWQPPRAVQPPPSPLFAEYDAYLVQHLGLAERTIHKQLSHLSKFYNYLVRAGKE
WYSIQLTDVDAFLVGCSTQYSRSYVSNIASTVRCFYRFLHWSGKNPIDISEAIIAPIQRPFERPRRALPWEDVQRLLNAV
DRSTPVGLRDYAILLMLSTYGLGAAEVNRLQFQAIDWNANTLAVYRPKTGVSFTLPLLPPISEALAHYLRYGRPVDTPTR
HIFVQMQVPFEPYVRSSAIGHIVAKHARKAGINAPSLGSHVLRHSHAGRQIDLGTRPQVLSELLGHSDPESVSAYVRIAT
DSLREIALPVPA

Sequences:

>Translated_412_residues
MSIHNKRSSAAIAAAPTTDEIRRIWSGERRFGAGTADKYLICIQQFRTYCSQLGLIEREELTLEGANRFIGWYARRRSRP
RRSHQNFRSALRSLARVYHRMGVAPPDWQPPRAVQPPPSPLFAEYDAYLVQHLGLAERTIHKQLSHLSKFYNYLVRAGKE
WYSIQLTDVDAFLVGCSTQYSRSYVSNIASTVRCFYRFLHWSGKNPIDISEAIIAPIQRPFERPRRALPWEDVQRLLNAV
DRSTPVGLRDYAILLMLSTYGLGAAEVNRLQFQAIDWNANTLAVYRPKTGVSFTLPLLPPISEALAHYLRYGRPVDTPTR
HIFVQMQVPFEPYVRSSAIGHIVAKHARKAGINAPSLGSHVLRHSHAGRQIDLGTRPQVLSELLGHSDPESVSAYVRIAT
DSLREIALPVPA
>Mature_411_residues
SIHNKRSSAAIAAAPTTDEIRRIWSGERRFGAGTADKYLICIQQFRTYCSQLGLIEREELTLEGANRFIGWYARRRSRPR
RSHQNFRSALRSLARVYHRMGVAPPDWQPPRAVQPPPSPLFAEYDAYLVQHLGLAERTIHKQLSHLSKFYNYLVRAGKEW
YSIQLTDVDAFLVGCSTQYSRSYVSNIASTVRCFYRFLHWSGKNPIDISEAIIAPIQRPFERPRRALPWEDVQRLLNAVD
RSTPVGLRDYAILLMLSTYGLGAAEVNRLQFQAIDWNANTLAVYRPKTGVSFTLPLLPPISEALAHYLRYGRPVDTPTRH
IFVQMQVPFEPYVRSSAIGHIVAKHARKAGINAPSLGSHVLRHSHAGRQIDLGTRPQVLSELLGHSDPESVSAYVRIATD
SLREIALPVPA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=277, Percent_Identity=28.5198555956679, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46672; Mature: 46541

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIHNKRSSAAIAAAPTTDEIRRIWSGERRFGAGTADKYLICIQQFRTYCSQLGLIEREE
CCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
LTLEGANRFIGWYARRRSRPRRSHQNFRSALRSLARVYHRMGVAPPDWQPPRAVQPPPSP
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LFAEYDAYLVQHLGLAERTIHKQLSHLSKFYNYLVRAGKEWYSIQLTDVDAFLVGCSTQY
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHEEEEECCCHH
SRSYVSNIASTVRCFYRFLHWSGKNPIDISEAIIAPIQRPFERPRRALPWEDVQRLLNAV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DRSTPVGLRDYAILLMLSTYGLGAAEVNRLQFQAIDWNANTLAVYRPKTGVSFTLPLLPP
HCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCEEEEECCCCCCEEEECCCCC
ISEALAHYLRYGRPVDTPTRHIFVQMQVPFEPYVRSSAIGHIVAKHARKAGINAPSLGSH
HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
VLRHSHAGRQIDLGTRPQVLSELLGHSDPESVSAYVRIATDSLREIALPVPA
HHHHCCCCCEECCCCCHHHHHHHHCCCCCCHHHHHHEEEHHHHHHHCCCCCC
>Mature Secondary Structure 
SIHNKRSSAAIAAAPTTDEIRRIWSGERRFGAGTADKYLICIQQFRTYCSQLGLIEREE
CCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHH
LTLEGANRFIGWYARRRSRPRRSHQNFRSALRSLARVYHRMGVAPPDWQPPRAVQPPPSP
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
LFAEYDAYLVQHLGLAERTIHKQLSHLSKFYNYLVRAGKEWYSIQLTDVDAFLVGCSTQY
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHEEEEECCCHH
SRSYVSNIASTVRCFYRFLHWSGKNPIDISEAIIAPIQRPFERPRRALPWEDVQRLLNAV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DRSTPVGLRDYAILLMLSTYGLGAAEVNRLQFQAIDWNANTLAVYRPKTGVSFTLPLLPP
HCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCEEEEECCCCCCEEEECCCCC
ISEALAHYLRYGRPVDTPTRHIFVQMQVPFEPYVRSSAIGHIVAKHARKAGINAPSLGSH
HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
VLRHSHAGRQIDLGTRPQVLSELLGHSDPESVSAYVRIATDSLREIALPVPA
HHHHCCCCCEECCCCCHHHHHHHHCCCCCCHHHHHHEEEHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]