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The map label for this gene is pecT [H]

Identifier: 13476492

GI number: 13476492

Start: 6474480

End: 6475343

Strand: Direct

Name: pecT [H]

Synonym: mlr7826

Alternate gene names: 13476492

Gene position: 6474480-6475343 (Clockwise)

Preceding gene: 13476489

Following gene: 13476495

Centisome position: 92.02

GC content: 69.68

Gene sequence:

>864_bases
ATGGAAACGCTCGATCCGGATTTGCTCAAAACCTTCCTCGCTTTCGTCGACAGCGGTTCGCTGGTGCAGGCAGCGTCGAG
CGTTGGCCGTTCGCCTTCGGCGGTGACCGCCCAGATGCAGCGGCTGGAGGAGATCGTCGGCGAGCCGCTGCTGGCGCCGC
AGGGGAGGGGGCGCGGCCTGACGCCGGCCGGGGAGGACCTTGTCGGCCATGCCAGGCGCATCCTTGCCGCGCACCGCGAG
GCGTGGCTGGCGCTGAAGGGAGCGCGGGCTGCCGGGCGTGTCGCGATCGGCACGACGCAGGATTTCGCCGACAGCGGCTT
GCCGGAACTTTTGCGTGCCTTTGCCACCAGCCATCCGCGCGTCAGGATCGAATTGCGGGTCGGCCGCTCCGCCGAACTGG
CGCAGGCGCTGCAGGCCGGCTGCCTCGATCTGGCGATCGTCATGCGCCAGACAGCGGTACCCGATGAGGTCGGCGTCCTG
CGCGAGCCGATGATGTGGCTGTGTTCTGGGAAAGGGCTCGCCTCGCGGCAGGAAGAACTGCCGCTGGCGCTGCTCGATCC
CTATTGCGGTTTTCGCGAGGCCGCCCTCGCAGCGCTCGATGCTGCCGGCCGCCGCTACCGCATCGCCGCCGGCAGCGCCA
GCCTGGCCGGCCTGCGCACCGCGGTGAATGCCGGCGTTGCACTGACCTTGCGAACCCCGCGCTTTGCCCATTCCGGCATT
GTCGAAGCGCCGCGTGAGCTTGGCCTGCCGTCGGTTCCGATGGCCGAATTCGCGATCCGGCTGCGTACAGGAGCCGATGC
TTCCGCGGGCGATCTGGCGGCGCTGCTCAGCGGCAACCTGGCCCTGTCCCAGCCGCCTGGCTGA

Upstream 100 bases:

>100_bases
GTTTGTAGCGGCGTCTGACCGCCGTTGGAGAGACCATGCCATCTTAATTGAGTCAAAAAAATCGAATTGTTTTCAACTAA
AGATTCGATATCATCGAATT

Downstream 100 bases:

>100_bases
TCAGGCAGGGCCGGGAACTGCGTCGCCGGCCTGTCGGCAAAGAAAAAGCCGACCTTGCGGTCGGCTTCGGAGTAGGACGG
GCCGAGGGGTTTGGGGGGAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
METLDPDLLKTFLAFVDSGSLVQAASSVGRSPSAVTAQMQRLEEIVGEPLLAPQGRGRGLTPAGEDLVGHARRILAAHRE
AWLALKGARAAGRVAIGTTQDFADSGLPELLRAFATSHPRVRIELRVGRSAELAQALQAGCLDLAIVMRQTAVPDEVGVL
REPMMWLCSGKGLASRQEELPLALLDPYCGFREAALAALDAAGRRYRIAAGSASLAGLRTAVNAGVALTLRTPRFAHSGI
VEAPRELGLPSVPMAEFAIRLRTGADASAGDLAALLSGNLALSQPPG

Sequences:

>Translated_287_residues
METLDPDLLKTFLAFVDSGSLVQAASSVGRSPSAVTAQMQRLEEIVGEPLLAPQGRGRGLTPAGEDLVGHARRILAAHRE
AWLALKGARAAGRVAIGTTQDFADSGLPELLRAFATSHPRVRIELRVGRSAELAQALQAGCLDLAIVMRQTAVPDEVGVL
REPMMWLCSGKGLASRQEELPLALLDPYCGFREAALAALDAAGRRYRIAAGSASLAGLRTAVNAGVALTLRTPRFAHSGI
VEAPRELGLPSVPMAEFAIRLRTGADASAGDLAALLSGNLALSQPPG
>Mature_287_residues
METLDPDLLKTFLAFVDSGSLVQAASSVGRSPSAVTAQMQRLEEIVGEPLLAPQGRGRGLTPAGEDLVGHARRILAAHRE
AWLALKGARAAGRVAIGTTQDFADSGLPELLRAFATSHPRVRIELRVGRSAELAQALQAGCLDLAIVMRQTAVPDEVGVL
REPMMWLCSGKGLASRQEELPLALLDPYCGFREAALAALDAAGRRYRIAAGSASLAGLRTAVNAGVALTLRTPRFAHSGI
VEAPRELGLPSVPMAEFAIRLRTGADASAGDLAALLSGNLALSQPPG

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=255, Percent_Identity=34.5098039215686, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1787806, Length=174, Percent_Identity=28.735632183908, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1790208, Length=148, Percent_Identity=33.7837837837838, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30006; Mature: 30006

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS50931 HTH_LYSR ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLDPDLLKTFLAFVDSGSLVQAASSVGRSPSAVTAQMQRLEEIVGEPLLAPQGRGRGL
CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TPAGEDLVGHARRILAAHREAWLALKGARAAGRVAIGTTQDFADSGLPELLRAFATSHPR
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCHHHHHCCHHHHHHHHHCCCCC
VRIELRVGRSAELAQALQAGCLDLAIVMRQTAVPDEVGVLREPMMWLCSGKGLASRQEEL
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHC
PLALLDPYCGFREAALAALDAAGRRYRIAAGSASLAGLRTAVNAGVALTLRTPRFAHSGI
CCCEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHCCH
VEAPRELGLPSVPMAEFAIRLRTGADASAGDLAALLSGNLALSQPPG
HHCHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
METLDPDLLKTFLAFVDSGSLVQAASSVGRSPSAVTAQMQRLEEIVGEPLLAPQGRGRGL
CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TPAGEDLVGHARRILAAHREAWLALKGARAAGRVAIGTTQDFADSGLPELLRAFATSHPR
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEECCCHHHHHCCHHHHHHHHHCCCCC
VRIELRVGRSAELAQALQAGCLDLAIVMRQTAVPDEVGVLREPMMWLCSGKGLASRQEEL
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHC
PLALLDPYCGFREAALAALDAAGRRYRIAAGSASLAGLRTAVNAGVALTLRTPRFAHSGI
CCCEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCCHHHCCH
VEAPRELGLPSVPMAEFAIRLRTGADASAGDLAALLSGNLALSQPPG
HHCHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]