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The map label for this gene is psd

Identifier: 13476488

GI number: 13476488

Start: 6470049

End: 6470747

Strand: Direct

Name: psd

Synonym: mlr7821

Alternate gene names: 13476488

Gene position: 6470049-6470747 (Clockwise)

Preceding gene: 13476486

Following gene: 13476489

Centisome position: 91.96

GC content: 65.09

Gene sequence:

>699_bases
ATGAGCCTTGTCGACACGGTCAAGAACGCGTTCGTACCGATCCATCGCGAAGGCTATCCCTTCATCGCGGCCTGTGGCGC
GGGTACGCTTTTCCTTGGCTATTTCTCCTCGGTCCTGTTCTGGCTCGGCCTGATCCTGACAGCCTGGTGCGTCTATTTCT
TCCGCGACCCCGAGCGGGTTACGCCGGTAGACGACCGCCTGGTGGTGAGCCCCGCCGATGGCATCATTTCGGCTGTAGGA
CCGGCCGTGCCGCCGCGCGAGCTTGGCCTCGGCAATGTCGAGATGACCCGCATCTCGGTGTTCATGAACGTCTTTTCCTG
CCATGTGAACCGCTCGCCCGTGCGCGGCCGTATTGCCAAGATCGAACATCGGCCGGGAAAATTCCTCAACGCCGAACTCG
ACAAGGCCAGCACCGAAAACGAACGCAACGGCCTGGTCATCGAAAGCCCCAACGGCACGGTGGCGGCCGTCCAGATAGCC
GGCCTGGTGGCGCGCCGCATCGTCTGCTGGGCCGAGGCCGGCGGCTCGATCGGCACAGGCGAGCGTTTCGGCCTGATCCG
CTTCGGCTCGCGCGTCGACGTGTTCCTGCCCTTGACCGCGACGCCACGCGTCGCCGTTGGCCAGACGGCGGTCGGCGGTG
AAACCGTGCTCGCCGAATTCGGCGGCGTCGCCGGCACCCCGCTGGTCAGGATTTCCTGA

Upstream 100 bases:

>100_bases
CGCCAGCGGCAGCCAATGCGGCGTGGCCGATTGTTGCGTTGCGGGCAGGGGGTGTTTCGGCTATTGAGGCCGGACCTGAA
ACAGGGACCGCCCCCACCCC

Downstream 100 bases:

>100_bases
GCCTTGGGCGCGCCATTCAAGAAGTTCGAGGCCCATGCCAGCGGCGGTCCGCGCATCCGCGAGATCCCGATGCGCATGGT
GCTGCCCAATCTGGTCACCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSLVDTVKNAFVPIHREGYPFIAACGAGTLFLGYFSSVLFWLGLILTAWCVYFFRDPERVTPVDDRLVVSPADGIISAVG
PAVPPRELGLGNVEMTRISVFMNVFSCHVNRSPVRGRIAKIEHRPGKFLNAELDKASTENERNGLVIESPNGTVAAVQIA
GLVARRIVCWAEAGGSIGTGERFGLIRFGSRVDVFLPLTATPRVAVGQTAVGGETVLAEFGGVAGTPLVRIS

Sequences:

>Translated_232_residues
MSLVDTVKNAFVPIHREGYPFIAACGAGTLFLGYFSSVLFWLGLILTAWCVYFFRDPERVTPVDDRLVVSPADGIISAVG
PAVPPRELGLGNVEMTRISVFMNVFSCHVNRSPVRGRIAKIEHRPGKFLNAELDKASTENERNGLVIESPNGTVAAVQIA
GLVARRIVCWAEAGGSIGTGERFGLIRFGSRVDVFLPLTATPRVAVGQTAVGGETVLAEFGGVAGTPLVRIS
>Mature_231_residues
SLVDTVKNAFVPIHREGYPFIAACGAGTLFLGYFSSVLFWLGLILTAWCVYFFRDPERVTPVDDRLVVSPADGIISAVGP
AVPPRELGLGNVEMTRISVFMNVFSCHVNRSPVRGRIAKIEHRPGKFLNAELDKASTENERNGLVIESPNGTVAAVQIAG
LVARRIVCWAEAGGSIGTGERFGLIRFGSRVDVFLPLTATPRVAVGQTAVGGETVLAEFGGVAGTPLVRIS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_RHILO (Q984W0)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_108058.1
- GeneID:   1230710
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr7821
- NMPDR:   fig|266835.1.peg.6157
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BRENDA:   4.1.1.65
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24784; Mature: 24653

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVDTVKNAFVPIHREGYPFIAACGAGTLFLGYFSSVLFWLGLILTAWCVYFFRDPERV
CCHHHHHHHHEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPVDDRLVVSPADGIISAVGPAVPPRELGLGNVEMTRISVFMNVFSCHVNRSPVRGRIAK
CCCCCEEEEECCCHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
IEHRPGKFLNAELDKASTENERNGLVIESPNGTVAAVQIAGLVARRIVCWAEAGGSIGTG
EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHEEECCCCCCCCC
ERFGLIRFGSRVDVFLPLTATPRVAVGQTAVGGETVLAEFGGVAGTPLVRIS
CCEEEEEECCEEEEEEECCCCCCEECCCCCCCCHHHHHHHCCCCCCCEEEEC
>Mature Secondary Structure 
SLVDTVKNAFVPIHREGYPFIAACGAGTLFLGYFSSVLFWLGLILTAWCVYFFRDPERV
CHHHHHHHHEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TPVDDRLVVSPADGIISAVGPAVPPRELGLGNVEMTRISVFMNVFSCHVNRSPVRGRIAK
CCCCCEEEEECCCHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE
IEHRPGKFLNAELDKASTENERNGLVIESPNGTVAAVQIAGLVARRIVCWAEAGGSIGTG
EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHEEECCCCCCCCC
ERFGLIRFGSRVDVFLPLTATPRVAVGQTAVGGETVLAEFGGVAGTPLVRIS
CCEEEEEECCEEEEEEECCCCCCEECCCCCCCCHHHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968