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The map label for this gene is rarD [H]

Identifier: 13476476

GI number: 13476476

Start: 6458569

End: 6459501

Strand: Direct

Name: rarD [H]

Synonym: mlr7806

Alternate gene names: 13476476

Gene position: 6458569-6459501 (Clockwise)

Preceding gene: 13476475

Following gene: 13476478

Centisome position: 91.79

GC content: 64.09

Gene sequence:

>933_bases
ATGGTCACTGAAGCAATTACCCTGGACGCAGAGTCAAAAGGCCGTCGCGGCTTCCTGCTGGCGCTGGGCGCCTATCTCTT
GTGGGGGTTGCTGCCTTTCTACATGAAGGCGGTGGCGCATCTGCCACTTGCCGAGGTGATCGCCCACCGCATCGTCTGGT
CGGTGCCGATCGCCGCGGCGGTCCTGGTCTGGGCCGGCCGCACGGCGGACTTCAAGGCGGCCATTCGCTCCCCCCGCACC
ATCGCCATGGCGGCGCTGACGGCGGCGCTGATTTCGGTCAACTGGGGCATCTATGTCTGGGCGATCGCCGTCGACCGCAC
CGTCGAGACCGCGCTTGGCTATTACATCAACCCGCTGGTCAGCGTCGTCGTTGGTGCGCTGCTGCTTGGCGAGCGACTCG
ACCGTTTGCAGATCGCGGCGGTGGTGCTGGCGACGGTCGCCGTCACGGTGCTGACAATCGAGGGCGGCAAGCTGCCCTGG
GTGTCGCTGGCGCTGGCGTTTTCCTTCGCCGCCTACGGCTTTTTCCGCAAGACACTGCCGATCGGCCCAAGCCAGGGCTT
TCTGCTGGAAGTGCTTTTGCTGTCCGTGCCGGCTCTTGGCTGTATCGTCTACCTGATCGCGACCGGACAGGACCACATCG
TATCCAGCACCGGCACCGACACGGCGTTGCTGATCGGCTGCGGTCCGGTCACGTCGGTGCCGCTGCTTTTGTTTGCGTTC
GGCGCCAAGCTTTTGCGCCTCTCGACCATCGGCATCATGCAATACATCGCGCCGACCATGGTGTTCCTGATCGCGGTTCT
GATCTTTGACGAGCCGTTCGGCACGGCACAAGCCATTGCCTTTGTCCTGATCTGGACGGCGCTGGCGATGTATTCCTGGT
CGATGCTGGTCACGGCGCGACGGGCGGCGGCTACATCTGTCCGAGCCGCCTGA

Upstream 100 bases:

>100_bases
TTGTTGCCGCCGAATAAGGTTGAACCATAAGCGAAAGTCCATTGATCCATCAGAACTTTGTGATGGTCTTGCCAAGGTTA
CTGGGCCATAGCGTTGGGCC

Downstream 100 bases:

>100_bases
CGAACAGGTACGTCACGCCGGCGATCAGCAGCGAAACCGCCGTCACTACCCAGAAACCCATCGGCGTGTCGACCAGGGGC
AAACCGCCGACATTCATGCC

Product: rarD protein, chloamphenicol sensitive

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MVTEAITLDAESKGRRGFLLALGAYLLWGLLPFYMKAVAHLPLAEVIAHRIVWSVPIAAAVLVWAGRTADFKAAIRSPRT
IAMAALTAALISVNWGIYVWAIAVDRTVETALGYYINPLVSVVVGALLLGERLDRLQIAAVVLATVAVTVLTIEGGKLPW
VSLALAFSFAAYGFFRKTLPIGPSQGFLLEVLLLSVPALGCIVYLIATGQDHIVSSTGTDTALLIGCGPVTSVPLLLFAF
GAKLLRLSTIGIMQYIAPTMVFLIAVLIFDEPFGTAQAIAFVLIWTALAMYSWSMLVTARRAAATSVRAA

Sequences:

>Translated_310_residues
MVTEAITLDAESKGRRGFLLALGAYLLWGLLPFYMKAVAHLPLAEVIAHRIVWSVPIAAAVLVWAGRTADFKAAIRSPRT
IAMAALTAALISVNWGIYVWAIAVDRTVETALGYYINPLVSVVVGALLLGERLDRLQIAAVVLATVAVTVLTIEGGKLPW
VSLALAFSFAAYGFFRKTLPIGPSQGFLLEVLLLSVPALGCIVYLIATGQDHIVSSTGTDTALLIGCGPVTSVPLLLFAF
GAKLLRLSTIGIMQYIAPTMVFLIAVLIFDEPFGTAQAIAFVLIWTALAMYSWSMLVTARRAAATSVRAA
>Mature_310_residues
MVTEAITLDAESKGRRGFLLALGAYLLWGLLPFYMKAVAHLPLAEVIAHRIVWSVPIAAAVLVWAGRTADFKAAIRSPRT
IAMAALTAALISVNWGIYVWAIAVDRTVETALGYYINPLVSVVVGALLLGERLDRLQIAAVVLATVAVTVLTIEGGKLPW
VSLALAFSFAAYGFFRKTLPIGPSQGFLLEVLLLSVPALGCIVYLIATGQDHIVSSTGTDTALLIGCGPVTSVPLLLFAF
GAKLLRLSTIGIMQYIAPTMVFLIAVLIFDEPFGTAQAIAFVLIWTALAMYSWSMLVTARRAAATSVRAA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=297, Percent_Identity=39.3939393939394, Blast_Score=211, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33019; Mature: 33019

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTEAITLDAESKGRRGFLLALGAYLLWGLLPFYMKAVAHLPLAEVIAHRIVWSVPIAAA
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VLVWAGRTADFKAAIRSPRTIAMAALTAALISVNWGIYVWAIAVDRTVETALGYYINPLV
HHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHH
SVVVGALLLGERLDRLQIAAVVLATVAVTVLTIEGGKLPWVSLALAFSFAAYGFFRKTLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
IGPSQGFLLEVLLLSVPALGCIVYLIATGQDHIVSSTGTDTALLIGCGPVTSVPLLLFAF
CCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCEEEEEECCCHHHHHHHHHHH
GAKLLRLSTIGIMQYIAPTMVFLIAVLIFDEPFGTAQAIAFVLIWTALAMYSWSMLVTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAATSVRAA
HHHHHHCCCC
>Mature Secondary Structure
MVTEAITLDAESKGRRGFLLALGAYLLWGLLPFYMKAVAHLPLAEVIAHRIVWSVPIAAA
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VLVWAGRTADFKAAIRSPRTIAMAALTAALISVNWGIYVWAIAVDRTVETALGYYINPLV
HHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHH
SVVVGALLLGERLDRLQIAAVVLATVAVTVLTIEGGKLPWVSLALAFSFAAYGFFRKTLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
IGPSQGFLLEVLLLSVPALGCIVYLIATGQDHIVSSTGTDTALLIGCGPVTSVPLLLFAF
CCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCEEEEEECCCHHHHHHHHHHH
GAKLLRLSTIGIMQYIAPTMVFLIAVLIFDEPFGTAQAIAFVLIWTALAMYSWSMLVTAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAATSVRAA
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA