| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is 13476397
Identifier: 13476397
GI number: 13476397
Start: 6384009
End: 6384884
Strand: Reverse
Name: 13476397
Synonym: mll7705
Alternate gene names: NA
Gene position: 6384884-6384009 (Counterclockwise)
Preceding gene: 13476398
Following gene: 13476396
Centisome position: 90.75
GC content: 68.15
Gene sequence:
>876_bases ATGACCGCCGCCTCCCCCAACAGCCCGACCGATATTGCCGACATCCTGGCCTTCTATGCCAGCGCCGGCGTCGACGAGGC GCTGGAAGACGCTCCGGTGAACCGCTTCGCCGAGGCGGCGCCGAGACCTGTCGAGCGCGCGCCGGCGCCGGTGGCGCCAC CTCGCGAAGAGAAGGCACCGGAGCGGCCAGCGGCACCGCCCGGACTGGATGCAAGCAAGGTTCCGGATGCGCCACCGGCG CGTTCATCGGTCGCCGCCGTGCCAGACGAGGCTCAGGCGGCGCTTGCGCGCCAGTTGGCGACAACCGCAACGACCCTGGA CGAGTTGCGCCAGCACATGGCTGCCTTCGACGGCTGCAATCTCAAGGCCACCGCCAAGAACCTGGTCTTCGCCGATGGAA ACCCGGACGCCGCGGTGATGCTGGTGGGCGAAGCGCCGGGCCGCGACGAGGATATTGAGGGGCTGCCCTTCGTCGGCCGC TCGGGCCGGCTGCTCGATCGCATGCTGGCCGCGATCGGGCTCGACCGCACTTCGGTCTACATCGCCAACGTCATTCCGTG GCGGCCGCCGGGCAACCGCACGCCGACGCCGCATGAGACCGAGATCTGCCGGCCGTTCATCGAGCGGCAGATCGAACTGG TCAATCCCAAGGTGCTGGTCAATCTCGGCGGACCGTCGGCCAAGACCTTGCTCAACACCTCGGAAGGTATTTTGCGGCTG CGCGGCAACTGGCGTGTCCACACCACCGCCTCGGGCATCGCCATTCCGGCCATGCCGACGCTGCATCCGGCCTATCTCCT GCGAACGCCCGCGCACAAGAAGCTGGCATGGCGGGATTTTCTCGAGGTCAAGGCGAAGCTGCGGGCGCTCTCCTAG
Upstream 100 bases:
>100_bases GCGATGGACCTTCTATCTGGTGCAAGACCCGCGCATTCCGACGGGATAGGGAAAGCCGCCGGTCTTGCAAATTTCGGCCA TGGGGACGAATGTGCGCGCC
Downstream 100 bases:
>100_bases CGATAACCTTGGAGGTAATTGAAATCCCTCTGCCGCCGCCTTAATCCTGCCCCATGACAACAGCCCAAACCTCCGCCGGC AGTCTCATCCGCGAATGGCG
Product: hypothetical protein
Products: diphosphate; DNAn+1
Alternate protein names: Uracil-DNA Glycosylase; Phage SPO1 DNA Polymerase-Like Protein; DNA Polymerase; Uracil DNA Glycosylase Superfamily Protein; DNA Polymerase-Related Protein; DNA Glycosylase; Uracil-DNA Glycosylase Family 4 Protein; DNA-Directed DNA Polymerase; Bacteriophage-Related DNA Polymerase; DNA Polymerase Bacteriophage-Type; N-Terminus Of Bacteriophage-Type DNA Polymerase; Phage Spo1 DNA Polymerase-Related Protein; Phage DNA Polymerase; Uracil-DNA Glycosylase C-Terminal Domain Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; DNA Polymerase Bacteriophage-Type Protein; Phage SPO1 DNA Polymerase Domain-Containing Protein; DNA Polymerase Domain-Containing Protein; DNA Polymerase-Related Protein Bacteriophage-Type; Uracil-DNA Glycosylase C-Terminal; Phage SpO1 DNA Polymerase-Related Protein; Bacteriophage-Type DNA Polymerase; DNA Polymerase Related Protein; Uracil-DNA Glycosylase Phage-Related Protein; Phage Shock Protein E; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase-Like Protein; Uracil-DNA Glycosylase-Related Protein
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MTAASPNSPTDIADILAFYASAGVDEALEDAPVNRFAEAAPRPVERAPAPVAPPREEKAPERPAAPPGLDASKVPDAPPA RSSVAAVPDEAQAALARQLATTATTLDELRQHMAAFDGCNLKATAKNLVFADGNPDAAVMLVGEAPGRDEDIEGLPFVGR SGRLLDRMLAAIGLDRTSVYIANVIPWRPPGNRTPTPHETEICRPFIERQIELVNPKVLVNLGGPSAKTLLNTSEGILRL RGNWRVHTTASGIAIPAMPTLHPAYLLRTPAHKKLAWRDFLEVKAKLRALS
Sequences:
>Translated_291_residues MTAASPNSPTDIADILAFYASAGVDEALEDAPVNRFAEAAPRPVERAPAPVAPPREEKAPERPAAPPGLDASKVPDAPPA RSSVAAVPDEAQAALARQLATTATTLDELRQHMAAFDGCNLKATAKNLVFADGNPDAAVMLVGEAPGRDEDIEGLPFVGR SGRLLDRMLAAIGLDRTSVYIANVIPWRPPGNRTPTPHETEICRPFIERQIELVNPKVLVNLGGPSAKTLLNTSEGILRL RGNWRVHTTASGIAIPAMPTLHPAYLLRTPAHKKLAWRDFLEVKAKLRALS >Mature_290_residues TAASPNSPTDIADILAFYASAGVDEALEDAPVNRFAEAAPRPVERAPAPVAPPREEKAPERPAAPPGLDASKVPDAPPAR SSVAAVPDEAQAALARQLATTATTLDELRQHMAAFDGCNLKATAKNLVFADGNPDAAVMLVGEAPGRDEDIEGLPFVGRS GRLLDRMLAAIGLDRTSVYIANVIPWRPPGNRTPTPHETEICRPFIERQIELVNPKVLVNLGGPSAKTLLNTSEGILRLR GNWRVHTTASGIAIPAMPTLHPAYLLRTPAHKKLAWRDFLEVKAKLRALS
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 31072; Mature: 30941
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAASPNSPTDIADILAFYASAGVDEALEDAPVNRFAEAAPRPVERAPAPVAPPREEKAP CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCCCHHHCCCCCCCCCHHCCC ERPAAPPGLDASKVPDAPPARSSVAAVPDEAQAALARQLATTATTLDELRQHMAAFDGCN CCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LKATAKNLVFADGNPDAAVMLVGEAPGRDEDIEGLPFVGRSGRLLDRMLAAIGLDRTSVY CEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE IANVIPWRPPGNRTPTPHETEICRPFIERQIELVNPKVLVNLGGPSAKTLLNTSEGILRL EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCEEEE RGNWRVHTTASGIAIPAMPTLHPAYLLRTPAHKKLAWRDFLEVKAKLRALS ECCEEEEEECCCEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TAASPNSPTDIADILAFYASAGVDEALEDAPVNRFAEAAPRPVERAPAPVAPPREEKAP CCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCCCHHHCCCCCCCCCHHCCC ERPAAPPGLDASKVPDAPPARSSVAAVPDEAQAALARQLATTATTLDELRQHMAAFDGCN CCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC LKATAKNLVFADGNPDAAVMLVGEAPGRDEDIEGLPFVGRSGRLLDRMLAAIGLDRTSVY CEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE IANVIPWRPPGNRTPTPHETEICRPFIERQIELVNPKVLVNLGGPSAKTLLNTSEGILRL EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCEEEE RGNWRVHTTASGIAIPAMPTLHPAYLLRTPAHKKLAWRDFLEVKAKLRALS ECCEEEEEECCCEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA