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The map label for this gene is sodB [H]

Identifier: 13476344

GI number: 13476344

Start: 6325384

End: 6325983

Strand: Direct

Name: sodB [H]

Synonym: mlr7636

Alternate gene names: 13476344

Gene position: 6325384-6325983 (Clockwise)

Preceding gene: 13476343

Following gene: 13476345

Centisome position: 89.9

GC content: 57.67

Gene sequence:

>600_bases
ATGGCTTTTGAATTGCCCGCTCTGCCCTACGACTATGAGGCCTTGCAGCCTTACATGTCGAAAGAGACGCTGGAATATCA
CCACGACAAGCATCACAAGGCCTATGTCGACAATGGCAACAAGCTGGCTGCCGAGGCCGGAATGGGTGATCTGTCGGTCG
AAGAGGTGGTCAAGCAGTCGTTCGGCAAGAATGCCGGTCTCTTCAACAATGCCGCGCAGCACTACAATCACATCCATTTC
TGGAAGTGGATGAAGAAGGGCGGCGGCGGCAACAAGCTGCCGGCCGCGCTGCAGAAGGCTTTCGACAGCGATCTGGGCGG
CTACGACAAGTTCAAGGCTGATTTTGTCGCCGCCGGCACGACGCAGTTCGGTTCGGGCTGGGCCTGGGTGTCCGTCAAGG
ACGGCAAGCTGGCGATCTCGAAGACCCCGAACGGCGAAAATCCGCTCGTTCATGGCGCCTCACCGATCCTCGGCGTCGAC
GTCTGGGAACACTCCTATTACATCGACTACCGCAACGCCCGCCCGAAATATCTCGAGGCCTTCGTCGACAGCCTGATCAA
CTGGGATCATGTGCTGGAGCTCTACGAAAAGGCAAAGTGA

Upstream 100 bases:

>100_bases
GAAAGGGGACCGGCGCTTCATTCCGGAGTTGTTCCAGCTCAATCCAGTCCTATCTTAATCCGGTATCCGCACCGGATTTT
TCCACGAGGGAGTACTACCC

Downstream 100 bases:

>100_bases
TCGACAATCAGAAAGGCCCCGGCAATCCGGGGCCTTTCTTTTTCCGTATCGATCAGTGGCTGCGAAGGCCCGGAAAAAAC
CATCCGAGCAGAGGGAATAT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFELPALPYDYEALQPYMSKETLEYHHDKHHKAYVDNGNKLAAEAGMGDLSVEEVVKQSFGKNAGLFNNAAQHYNHIHF
WKWMKKGGGGNKLPAALQKAFDSDLGGYDKFKADFVAAGTTQFGSGWAWVSVKDGKLAISKTPNGENPLVHGASPILGVD
VWEHSYYIDYRNARPKYLEAFVDSLINWDHVLELYEKAK

Sequences:

>Translated_199_residues
MAFELPALPYDYEALQPYMSKETLEYHHDKHHKAYVDNGNKLAAEAGMGDLSVEEVVKQSFGKNAGLFNNAAQHYNHIHF
WKWMKKGGGGNKLPAALQKAFDSDLGGYDKFKADFVAAGTTQFGSGWAWVSVKDGKLAISKTPNGENPLVHGASPILGVD
VWEHSYYIDYRNARPKYLEAFVDSLINWDHVLELYEKAK
>Mature_198_residues
AFELPALPYDYEALQPYMSKETLEYHHDKHHKAYVDNGNKLAAEAGMGDLSVEEVVKQSFGKNAGLFNNAAQHYNHIHFW
KWMKKGGGGNKLPAALQKAFDSDLGGYDKFKADFVAAGTTQFGSGWAWVSVKDGKLAISKTPNGENPLVHGASPILGVDV
WEHSYYIDYRNARPKYLEAFVDSLINWDHVLELYEKAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=39.4088669950739, Blast_Score=139, Evalue=1e-33,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=39.4088669950739, Blast_Score=139, Evalue=1e-33,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=35.1758793969849, Blast_Score=115, Evalue=2e-26,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=48.9583333333333, Blast_Score=180, Evalue=4e-47,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=44, Blast_Score=166, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=36.8686868686869, Blast_Score=128, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=34.010152284264, Blast_Score=116, Evalue=8e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=213, Percent_Identity=31.4553990610329, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI17136812, Length=201, Percent_Identity=37.3134328358209, Blast_Score=130, Evalue=5e-31,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22325; Mature: 22194

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPYDYEALQPYMSKETLEYHHDKHHKAYVDNGNKLAAEAGMGDLSVEEVVKQS
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHH
FGKNAGLFNNAAQHYNHIHFWKWMKKGGGGNKLPAALQKAFDSDLGGYDKFKADFVAAGT
CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHEEECCC
TQFGSGWAWVSVKDGKLAISKTPNGENPLVHGASPILGVDVWEHSYYIDYRNARPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDSLINWDHVLELYEKAK
HHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure 
AFELPALPYDYEALQPYMSKETLEYHHDKHHKAYVDNGNKLAAEAGMGDLSVEEVVKQS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHH
FGKNAGLFNNAAQHYNHIHFWKWMKKGGGGNKLPAALQKAFDSDLGGYDKFKADFVAAGT
CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHEEECCC
TQFGSGWAWVSVKDGKLAISKTPNGENPLVHGASPILGVDVWEHSYYIDYRNARPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDSLINWDHVLELYEKAK
HHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]