BacMap

Definition	Mesorhizobium loti MAFF303099 chromosome, complete genome.
Accession	NC_002678
Length	7,036,071

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The map label for this gene is cbpA [H]

Identifier: 13476199

GI number: 13476199

Start: 6160978

End: 6161907

Strand: Direct

Name: cbpA [H]

Synonym: mlr7456

Alternate gene names: 13476199

Gene position: 6160978-6161907 (Clockwise)

Preceding gene: 13476198

Following gene: 13476200

Centisome position: 87.56

GC content: 66.56

Gene sequence:

>930_bases
ATGCGCGACCCGTATGAGGTCCTGGGCGTTGCAAAGAACGCATCGGCCAAGGACATAAAATCGGCGTACCGGAAACTCGC
CAAGAAACATCATCCGGACCAGAATCCGAATGATCCCAAGGCGAAGGACCGTTTTGCCGCGGCCAACCAGGCCTATGAGA
TCGTCGGCGACGAGAAGAACCGTGCCGCTTTCGATCGCGGCGAGATCGACGCCGACGGCAAGCCGCGCTTCCAGGGTTTT
GAGGGTGCCGCCGGTGGCGGCGACCCCTTTGCCGGGTTTCGCCGCCAGCAAGGCGCCGGCGGTTCGCGATTCGAATTCCG
ATCGGGGCGCCCGGGCGGCGATCCGTTCGACGGCAACAGCGATATTTTCAGCCAGATTTTCGGCGACGCCTTTTCCGGCG
CACGCGGTGCCGGCATGGGCGACCGCCGCCAGCCCGCGACGGCGGCCGATCTGAACGTCACGCTCGACGTCACCATCGAG
GAAGCCGCGACCGCCGAAAAGGTGACGGCGATGTTCCCGGATGGCCGCAAGGTGGCGGTCAAGCTGCCGGCCTTTGTCGA
AGATGGCCAGACCATCCGGCTGAAGGGGCAGGGCGAGCAGGGGCCGGGCCAGCCCGGCGACGCGCTGGTCAAAATCCATA
TCCGCCGGCATCCGCGCTACCGCATCGAGGGTCGCGACCTGCATGCCGATGTGCCGGTGTCGCTGGCGGATGCGGTGCTG
GGCGCCAAGGTGCCGGTCGAGACACCGACAGGCAGGCTGGCGGTCAACGTTCCCGCCTGGTCGAGCTCGGACAAGGTCCT
GCGGCTCAAGGGCAGGGGCCTGCCGGAAAAGGCCGGCGGCCATGGCGACCTCTACGCCCATGTCCGCATCATGCTGCCGG
AGGGCGGCGACAGCGCTCTCGAGGCGTTGCTGCGTGGTCAAAAAGGCTGA

Upstream 100 bases:

>100_bases
TTTTCCGCCTCCGATATGGTGACCTGCTACTGGAATTTCTTCCTATGCGAGCGCATATAGGGGGCAAGTATGGACTCAAC
TCATTTCCAGGGCAGGAAGC

Downstream 100 bases:

>100_bases
TCCAGCGCTCTTGTCCCCCGAACTGTCCGGTTTGAGCGCTTGAAGGGGCTGTGTGCCTGTGCGATAGGCACTCCACAAAG
CACAAACCTTGCGGAGAGCG

Product: heat shock protein DnaJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MRDPYEVLGVAKNASAKDIKSAYRKLAKKHHPDQNPNDPKAKDRFAAANQAYEIVGDEKNRAAFDRGEIDADGKPRFQGF
EGAAGGGDPFAGFRRQQGAGGSRFEFRSGRPGGDPFDGNSDIFSQIFGDAFSGARGAGMGDRRQPATAADLNVTLDVTIE
EAATAEKVTAMFPDGRKVAVKLPAFVEDGQTIRLKGQGEQGPGQPGDALVKIHIRRHPRYRIEGRDLHADVPVSLADAVL
GAKVPVETPTGRLAVNVPAWSSSDKVLRLKGRGLPEKAGGHGDLYAHVRIMLPEGGDSALEALLRGQKG

Sequences:

>Translated_309_residues
MRDPYEVLGVAKNASAKDIKSAYRKLAKKHHPDQNPNDPKAKDRFAAANQAYEIVGDEKNRAAFDRGEIDADGKPRFQGF
EGAAGGGDPFAGFRRQQGAGGSRFEFRSGRPGGDPFDGNSDIFSQIFGDAFSGARGAGMGDRRQPATAADLNVTLDVTIE
EAATAEKVTAMFPDGRKVAVKLPAFVEDGQTIRLKGQGEQGPGQPGDALVKIHIRRHPRYRIEGRDLHADVPVSLADAVL
GAKVPVETPTGRLAVNVPAWSSSDKVLRLKGRGLPEKAGGHGDLYAHVRIMLPEGGDSALEALLRGQKG
>Mature_309_residues
MRDPYEVLGVAKNASAKDIKSAYRKLAKKHHPDQNPNDPKAKDRFAAANQAYEIVGDEKNRAAFDRGEIDADGKPRFQGF
EGAAGGGDPFAGFRRQQGAGGSRFEFRSGRPGGDPFDGNSDIFSQIFGDAFSGARGAGMGDRRQPATAADLNVTLDVTIE
EAATAEKVTAMFPDGRKVAVKLPAFVEDGQTIRLKGQGEQGPGQPGDALVKIHIRRHPRYRIEGRDLHADVPVSLADAVL
GAKVPVETPTGRLAVNVPAWSSSDKVLRLKGRGLPEKAGGHGDLYAHVRIMLPEGGDSALEALLRGQKG

Specific function: DNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360838, Length=359, Percent_Identity=27.0194986072423, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI205360840, Length=359, Percent_Identity=27.0194986072423, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI7706495, Length=304, Percent_Identity=29.2763157894737, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI4504511, Length=287, Percent_Identity=27.8745644599303, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI6631085, Length=344, Percent_Identity=27.6162790697674, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI39204547, Length=326, Percent_Identity=27.6073619631902, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI194328760, Length=344, Percent_Identity=24.1279069767442, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI194328758, Length=344, Percent_Identity=24.4186046511628, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI56549115, Length=332, Percent_Identity=27.4096385542169, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI201862587, Length=332, Percent_Identity=27.4096385542169, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI201862518, Length=332, Percent_Identity=27.4096385542169, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI5453690, Length=345, Percent_Identity=25.7971014492754, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI56687498, Length=64, Percent_Identity=51.5625, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI23503241, Length=135, Percent_Identity=36.2962962962963, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI29126218, Length=62, Percent_Identity=50, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI47777312, Length=136, Percent_Identity=41.1764705882353, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI45504382, Length=62, Percent_Identity=50, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI24308127, Length=65, Percent_Identity=47.6923076923077, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI4885495, Length=67, Percent_Identity=52.2388059701493, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI17388799, Length=67, Percent_Identity=52.2388059701493, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI88501736, Length=132, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27151736, Length=132, Percent_Identity=36.3636363636364, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI21553335, Length=91, Percent_Identity=40.6593406593407, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1787235, Length=322, Percent_Identity=35.7142857142857, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786197, Length=344, Percent_Identity=29.6511627906977, Blast_Score=136, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI212645553, Length=306, Percent_Identity=30.0653594771242, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17534355, Length=341, Percent_Identity=28.1524926686217, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17554900, Length=75, Percent_Identity=49.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17554644, Length=85, Percent_Identity=43.5294117647059, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115532378, Length=93, Percent_Identity=38.7096774193548, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17553096, Length=120, Percent_Identity=31.6666666666667, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17553098, Length=120, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322194, Length=98, Percent_Identity=44.8979591836735, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321094, Length=385, Percent_Identity=24.1558441558442, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6323813, Length=118, Percent_Identity=38.9830508474576, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI19920464, Length=314, Percent_Identity=28.0254777070064, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24658562, Length=338, Percent_Identity=28.9940828402367, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24658555, Length=338, Percent_Identity=28.9940828402367, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI85726398, Length=349, Percent_Identity=27.2206303724928, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI18858081, Length=339, Percent_Identity=26.8436578171091, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI45552813, Length=119, Percent_Identity=38.655462184874, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45549272, Length=119, Percent_Identity=38.655462184874, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI45552811, Length=119, Percent_Identity=38.655462184874, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI17737735, Length=62, Percent_Identity=46.7741935483871, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24668523, Length=62, Percent_Identity=46.7741935483871, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28574723, Length=62, Percent_Identity=46.7741935483871, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24646562, Length=63, Percent_Identity=47.6190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646560, Length=63, Percent_Identity=47.6190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646558, Length=63, Percent_Identity=47.6190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24646556, Length=63, Percent_Identity=47.6190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21357547, Length=63, Percent_Identity=47.6190476190476, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24654066, Length=66, Percent_Identity=46.969696969697, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24654070, Length=66, Percent_Identity=46.969696969697, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24654068, Length=66, Percent_Identity=46.969696969697, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24654072, Length=66, Percent_Identity=46.969696969697, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24645889, Length=62, Percent_Identity=45.1612903225806, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 32955; Mature: 32955

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPYEVLGVAKNASAKDIKSAYRKLAKKHHPDQNPNDPKAKDRFAAANQAYEIVGDEKN
CCCHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCC
RAAFDRGEIDADGKPRFQGFEGAAGGGDPFAGFRRQQGAGGSRFEFRSGRPGGDPFDGNS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCH
DIFSQIFGDAFSGARGAGMGDRRQPATAADLNVTLDVTIEEAATAEKVTAMFPDGRKVAV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCHHHHEEECCCCCEEEE
KLPAFVEDGQTIRLKGQGEQGPGQPGDALVKIHIRRHPRYRIEGRDLHADVPVSLADAVL
ECCCEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEECCCEECCCCCHHHHHHHH
GAKVPVETPTGRLAVNVPAWSSSDKVLRLKGRGLPEKAGGHGDLYAHVRIMLPEGGDSAL
CCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCHHHH
EALLRGQKG
HHHHCCCCC
>Mature Secondary Structure
MRDPYEVLGVAKNASAKDIKSAYRKLAKKHHPDQNPNDPKAKDRFAAANQAYEIVGDEKN
CCCHHHHHEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCEEEEECCCCC
RAAFDRGEIDADGKPRFQGFEGAAGGGDPFAGFRRQQGAGGSRFEFRSGRPGGDPFDGNS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCH
DIFSQIFGDAFSGARGAGMGDRRQPATAADLNVTLDVTIEEAATAEKVTAMFPDGRKVAV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEHHHHCHHHHEEECCCCCEEEE
KLPAFVEDGQTIRLKGQGEQGPGQPGDALVKIHIRRHPRYRIEGRDLHADVPVSLADAVL
ECCCEECCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCEEECCCEECCCCCHHHHHHHH
GAKVPVETPTGRLAVNVPAWSSSDKVLRLKGRGLPEKAGGHGDLYAHVRIMLPEGGDSAL
CCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEEECCCHHHH
EALLRGQKG
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA