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The map label for this gene is rbsC [H]

Identifier: 13476137

GI number: 13476137

Start: 6100750

End: 6101760

Strand: Reverse

Name: rbsC [H]

Synonym: mll7374

Alternate gene names: 13476137

Gene position: 6101760-6100750 (Counterclockwise)

Preceding gene: 13476138

Following gene: 13476136

Centisome position: 86.72

GC content: 59.74

Gene sequence:

>1011_bases
GTGGTCCCTTGCCTCGAATTCCTGGAGCCTGCCTTGAAACGCCTCTTCAAGACCTATCTGGAAAAGCCGGAACTGGCGGG
ACTGATCCTGCTGGTGCTTCTGGTGGTGATTTTCGAGATCCGCTCGGATGGCGTGTTCCTCAATCAGGACAACCTGCGTG
GCATACTCGGCATTCTGCCGGAAACGGGCCTCGTCGCCATCGGCGTCACGATCCTGATGATCAGCGGCGAGTTCGACCTG
TCGGTTGGATCGGTGTTCGCGCTGATGCCGATGTGCATGGCGGTCCTCATGGTCGAAGGGGTGCCTTTCCCTCTTGCCTT
GCTGGCCGGGCTTGTCGTTTGCGCGGTGATCGGATTTATCAACGGCTATGTGACGATCTGGTTCGAGATCCCGAGCTTCA
TCACCACGCTCGGCATGCTTTTCATCGCCCGGTCACTGACGATCGTCGTCTCGGGCGGGTTTCCACCCTTGCTTCCGGCC
GATCTGCCGAACTGGCTGTTCACCTCGTTCGTCGGCCCCGGCAACATGTTCCGCATGTCGTTCCTGTGGTTTGCGGGAAT
TGCCCTGCTGACGTCACTGATGCTTTCCCGAACCAATTTCGGCAATTGGATAAAGGCCACCGGCGGCTTCCACCCCGCTG
CCGCCTCGATGGGCATCCCGACCGCGAGGGTAAAACTCGCATGCTTCGTGCTTTGCTCGATGCTGTCGGGTTTCGCCGGC
ATCCTGCAAGTGCTGAGGCTGGGTTCTCCTTTGCCTTCCATTGGCGAAGGTCTGGAACTCCAGGCGGTGGCCTCGGCGGT
CATCGGCGGCGCTTCGCTCGCAGGCGGCATCGGTACGGTCGCTGGCGGCATTATCGGTACAATCCTCATCCGCATCATCG
ACAACGGGCTAGTGCTCTCCAATGTCGACGCGAACTGGTTTAAATTCGCGATCGGCTTCCTGACCATTTTCGCCGTCGTC
GCCAATGCCTGGATGCGCAAGCGCGCCAAGGCGATCAAGATGGAGGGCTGA

Upstream 100 bases:

>100_bases
GCGCCCGGATCAGGCCGACGCGATCATGACGCTTTCATCGCAAGGTCTGCGTTAAGCCCACGCCCGCCATGTATTCACCC
GGCGGTGTTCGCACTGCCGG

Downstream 100 bases:

>100_bases
GCCATGGAAGATGCAATCATCTCTGTCCGCAATCTTCACAAATGGTATTCCGGTGTCCATGCGTTGAAGGGCGTGAGCCT
CGACCTGAAGCGCGGCGAGG

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MVPCLEFLEPALKRLFKTYLEKPELAGLILLVLLVVIFEIRSDGVFLNQDNLRGILGILPETGLVAIGVTILMISGEFDL
SVGSVFALMPMCMAVLMVEGVPFPLALLAGLVVCAVIGFINGYVTIWFEIPSFITTLGMLFIARSLTIVVSGGFPPLLPA
DLPNWLFTSFVGPGNMFRMSFLWFAGIALLTSLMLSRTNFGNWIKATGGFHPAAASMGIPTARVKLACFVLCSMLSGFAG
ILQVLRLGSPLPSIGEGLELQAVASAVIGGASLAGGIGTVAGGIIGTILIRIIDNGLVLSNVDANWFKFAIGFLTIFAVV
ANAWMRKRAKAIKMEG

Sequences:

>Translated_336_residues
MVPCLEFLEPALKRLFKTYLEKPELAGLILLVLLVVIFEIRSDGVFLNQDNLRGILGILPETGLVAIGVTILMISGEFDL
SVGSVFALMPMCMAVLMVEGVPFPLALLAGLVVCAVIGFINGYVTIWFEIPSFITTLGMLFIARSLTIVVSGGFPPLLPA
DLPNWLFTSFVGPGNMFRMSFLWFAGIALLTSLMLSRTNFGNWIKATGGFHPAAASMGIPTARVKLACFVLCSMLSGFAG
ILQVLRLGSPLPSIGEGLELQAVASAVIGGASLAGGIGTVAGGIIGTILIRIIDNGLVLSNVDANWFKFAIGFLTIFAVV
ANAWMRKRAKAIKMEG
>Mature_336_residues
MVPCLEFLEPALKRLFKTYLEKPELAGLILLVLLVVIFEIRSDGVFLNQDNLRGILGILPETGLVAIGVTILMISGEFDL
SVGSVFALMPMCMAVLMVEGVPFPLALLAGLVVCAVIGFINGYVTIWFEIPSFITTLGMLFIARSLTIVVSGGFPPLLPA
DLPNWLFTSFVGPGNMFRMSFLWFAGIALLTSLMLSRTNFGNWIKATGGFHPAAASMGIPTARVKLACFVLCSMLSGFAG
ILQVLRLGSPLPSIGEGLELQAVASAVIGGASLAGGIGTVAGGIIGTILIRIIDNGLVLSNVDANWFKFAIGFLTIFAVV
ANAWMRKRAKAIKMEG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=30.5555555555556, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=33.4448160535117, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790524, Length=321, Percent_Identity=31.7757009345794, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693152, Length=286, Percent_Identity=30.0699300699301, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082395, Length=276, Percent_Identity=32.6086956521739, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787793, Length=264, Percent_Identity=30.6818181818182, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=38.9705882352941, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788471, Length=345, Percent_Identity=31.0144927536232, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787794, Length=289, Percent_Identity=27.681660899654, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI145693214, Length=240, Percent_Identity=29.5833333333333, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35688; Mature: 35688

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPCLEFLEPALKRLFKTYLEKPELAGLILLVLLVVIFEIRSDGVFLNQDNLRGILGILP
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCC
ETGLVAIGVTILMISGEFDLSVGSVFALMPMCMAVLMVEGVPFPLALLAGLVVCAVIGFI
CCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
NGYVTIWFEIPSFITTLGMLFIARSLTIVVSGGFPPLLPADLPNWLFTSFVGPGNMFRMS
CCCEEEEEEHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHH
FLWFAGIALLTSLMLSRTNFGNWIKATGGFHPAAASMGIPTARVKLACFVLCSMLSGFAG
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ILQVLRLGSPLPSIGEGLELQAVASAVIGGASLAGGIGTVAGGIIGTILIRIIDNGLVLS
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEE
NVDANWFKFAIGFLTIFAVVANAWMRKRAKAIKMEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVPCLEFLEPALKRLFKTYLEKPELAGLILLVLLVVIFEIRSDGVFLNQDNLRGILGILP
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCC
ETGLVAIGVTILMISGEFDLSVGSVFALMPMCMAVLMVEGVPFPLALLAGLVVCAVIGFI
CCCHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
NGYVTIWFEIPSFITTLGMLFIARSLTIVVSGGFPPLLPADLPNWLFTSFVGPGNMFRMS
CCCEEEEEEHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHH
FLWFAGIALLTSLMLSRTNFGNWIKATGGFHPAAASMGIPTARVKLACFVLCSMLSGFAG
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ILQVLRLGSPLPSIGEGLELQAVASAVIGGASLAGGIGTVAGGIIGTILIRIIDNGLVLS
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEE
NVDANWFKFAIGFLTIFAVVANAWMRKRAKAIKMEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]