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The map label for this gene is rbsC [H]

Identifier: 13476130

GI number: 13476130

Start: 6094610

End: 6095638

Strand: Reverse

Name: rbsC [H]

Synonym: mll7365

Alternate gene names: 13476130

Gene position: 6095638-6094610 (Counterclockwise)

Preceding gene: 13476131

Following gene: 13476129

Centisome position: 86.63

GC content: 63.85

Gene sequence:

>1029_bases
GTGGAGATCGCGGCCCGTTCAAAACCATGTCGCGGGTTCCCTGTGGAAAATCATTCGCTTGTCCAACGCCTGATTGCGCG
GCCTGAATTCGGTCCCTTCGTGCTGCTCGTCGTCGAGATCGGCGTTTTCTGGGGCTTCAACCACGACTTCCTGTCGCCGC
AGAACATCTCCAACACGCTGGCCTTCACCGTCGAGCTCGGCCTGATCGCGCTGGCGATGACCTTGCTGATGACATCGGGC
GAATTCGACCTGTCCGTCGGATCCCTGTTCGGCTTCTCGCCCGTGCTGATGTGGACGCTGTTCAACGGCGGCGTCACCTC
GCTGGAGATGGGCTTCGTCATCGCGCTGGTGGTTGCTGCCTTGATCGGCCTGGTCAATGGCTGGTTCGTCACGCAGCTCA
AGATCCCGTCCTTCCTGGTGACCCTCGGCATGCTGCTCGTAGTGCGCGGCAGTGCCCTTTTCATCACCGACGGTTTTCCG
CAGCGCACCTGGAGCGCCGAGGGCAGCTGGCTGGCGGAGGCGCTGGTCGGCGACTTCTTCATCGGGCCGTTCCGCATCTA
CATGTCGCTGTTCTGGTTCATCGCCGCGGCGATCGCGCTCGGCTTTGTGCTGACGCAAAGCCGGACCGGCAACTGGATCC
AGGCGGCGGGCGGCAATCCCAACGCGGCGCGCGCCCGCGGCGTGAATGTCAACCGCGTCAAGATTGGCCTGTTCGTGCTG
TCGTCGCTCATGGCCTCGCTGGCCGGCGTCATCTCTTCGTTGCGCACGTCGGCCGCCAATCCCAACAGCGGCACCGGCTA
CGAGCTCGAAGTCATCGCCATGGTGGTGATCGGCGGCACGGCGCTGACCGGCGGACGCGGGACCATCATCGGCACCGTGC
TCGGCATCCTGATCCTGCGCGTGATGCGCAACGGCATCGTGCTGATCGGCGTGCCCGGTCTTGCCTACAACATCTTCATC
GGCGCGATCATCCTTGGCATGATGGCGCTCCACTCATGGCTGGAACGCCGGCACCAGGCAGGGACTTGA

Upstream 100 bases:

>100_bases
AGATCCTGTCCGGCAAATAAACCGCGATCCCTGGCGCCGCGCTCGTCTGATACGCGGCGCCAGACATCTTTCTTGCGCCG
CGATCATCCATCCAAGGCGG

Downstream 100 bases:

>100_bases
ACCATGGCCGAGCCATTGATCCGCATGCAGAACATCCGCAAGTCCTACGGCCGCGTGCAGGCGCTCGAGGACGCCAATTT
CCATGTCAACGAGCGCGAGA

Product: ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MEIAARSKPCRGFPVENHSLVQRLIARPEFGPFVLLVVEIGVFWGFNHDFLSPQNISNTLAFTVELGLIALAMTLLMTSG
EFDLSVGSLFGFSPVLMWTLFNGGVTSLEMGFVIALVVAALIGLVNGWFVTQLKIPSFLVTLGMLLVVRGSALFITDGFP
QRTWSAEGSWLAEALVGDFFIGPFRIYMSLFWFIAAAIALGFVLTQSRTGNWIQAAGGNPNAARARGVNVNRVKIGLFVL
SSLMASLAGVISSLRTSAANPNSGTGYELEVIAMVVIGGTALTGGRGTIIGTVLGILILRVMRNGIVLIGVPGLAYNIFI
GAIILGMMALHSWLERRHQAGT

Sequences:

>Translated_342_residues
MEIAARSKPCRGFPVENHSLVQRLIARPEFGPFVLLVVEIGVFWGFNHDFLSPQNISNTLAFTVELGLIALAMTLLMTSG
EFDLSVGSLFGFSPVLMWTLFNGGVTSLEMGFVIALVVAALIGLVNGWFVTQLKIPSFLVTLGMLLVVRGSALFITDGFP
QRTWSAEGSWLAEALVGDFFIGPFRIYMSLFWFIAAAIALGFVLTQSRTGNWIQAAGGNPNAARARGVNVNRVKIGLFVL
SSLMASLAGVISSLRTSAANPNSGTGYELEVIAMVVIGGTALTGGRGTIIGTVLGILILRVMRNGIVLIGVPGLAYNIFI
GAIILGMMALHSWLERRHQAGT
>Mature_342_residues
MEIAARSKPCRGFPVENHSLVQRLIARPEFGPFVLLVVEIGVFWGFNHDFLSPQNISNTLAFTVELGLIALAMTLLMTSG
EFDLSVGSLFGFSPVLMWTLFNGGVTSLEMGFVIALVVAALIGLVNGWFVTQLKIPSFLVTLGMLLVVRGSALFITDGFP
QRTWSAEGSWLAEALVGDFFIGPFRIYMSLFWFIAAAIALGFVLTQSRTGNWIQAAGGNPNAARARGVNVNRVKIGLFVL
SSLMASLAGVISSLRTSAANPNSGTGYELEVIAMVVIGGTALTGGRGTIIGTVLGILILRVMRNGIVLIGVPGLAYNIFI
GAIILGMMALHSWLERRHQAGT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=36.0927152317881, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1788896, Length=347, Percent_Identity=32.8530259365994, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789992, Length=372, Percent_Identity=30.1075268817204, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI145693152, Length=273, Percent_Identity=34.4322344322344, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87082395, Length=281, Percent_Identity=32.0284697508897, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=29.153605015674, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787793, Length=281, Percent_Identity=34.1637010676157, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI145693214, Length=273, Percent_Identity=35.1648351648352, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=25.9375, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788471, Length=289, Percent_Identity=32.8719723183391, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36550; Mature: 36550

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIAARSKPCRGFPVENHSLVQRLIARPEFGPFVLLVVEIGVFWGFNHDFLSPQNISNTL
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
AFTVELGLIALAMTLLMTSGEFDLSVGSLFGFSPVLMWTLFNGGVTSLEMGFVIALVVAA
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LIGLVNGWFVTQLKIPSFLVTLGMLLVVRGSALFITDGFPQRTWSAEGSWLAEALVGDFF
HHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
IGPFRIYMSLFWFIAAAIALGFVLTQSRTGNWIQAAGGNPNAARARGVNVNRVKIGLFVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHH
SSLMASLAGVISSLRTSAANPNSGTGYELEVIAMVVIGGTALTGGRGTIIGTVLGILILR
HHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEEEEEEECCEEECCCCCHHHHHHHHHHHHH
VMRNGIVLIGVPGLAYNIFIGAIILGMMALHSWLERRHQAGT
HHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIAARSKPCRGFPVENHSLVQRLIARPEFGPFVLLVVEIGVFWGFNHDFLSPQNISNTL
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
AFTVELGLIALAMTLLMTSGEFDLSVGSLFGFSPVLMWTLFNGGVTSLEMGFVIALVVAA
HHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LIGLVNGWFVTQLKIPSFLVTLGMLLVVRGSALFITDGFPQRTWSAEGSWLAEALVGDFF
HHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
IGPFRIYMSLFWFIAAAIALGFVLTQSRTGNWIQAAGGNPNAARARGVNVNRVKIGLFVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHH
SSLMASLAGVISSLRTSAANPNSGTGYELEVIAMVVIGGTALTGGRGTIIGTVLGILILR
HHHHHHHHHHHHHHHHCCCCCCCCCCEEHEEEEEEEECCEEECCCCCHHHHHHHHHHHHH
VMRNGIVLIGVPGLAYNIFIGAIILGMMALHSWLERRHQAGT
HHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]