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The map label for this gene is ycjO [C]

Identifier: 13476020

GI number: 13476020

Start: 5967960

End: 5968856

Strand: Direct

Name: ycjO [C]

Synonym: mlr7226

Alternate gene names: 13476020

Gene position: 5967960-5968856 (Clockwise)

Preceding gene: 13476019

Following gene: 13476021

Centisome position: 84.82

GC content: 57.19

Gene sequence:

>897_bases
ATGACCCGGCAAAAGCGCTCCCACCACAAGCTGAAACGAGCGGTCGCACCCTACCTCTATCTGTCGCCCTCGCTGCTCAT
AATCGGGCTTCTGATGCTGCTGCCGATGGTGACGGTGATTGCCTACTCGTTCCAGAACAGCGCGGTGCTGCGTCGTGACC
CAACCTTTGCCGGACTGAAACACTACCAGGCGATCTTCGACGATCCGGTGTTCTGGGCATCGCTGTGGCACACGCTCTAC
TTCACTTGCATGAGTGTCATTTTCCACATGACCATCGGCATGGTCTTCGCGCTCATGCTGAACAGCGACCGCATCAATCC
GACGCTGCGCAATATTCTGCGCGTGCTCTACATACTGCCCTGGCTGTTCACCGCGGTGATCATCGCGGTGATCTGGCGCC
TGCTGCTCGAGCCGAACGGCGTCGTGAACAGCATTCTCATGCAAATCGGCATTATCGGTTCCAAGATCGAATGGTTTTCC
TCGCCTGAGACCGCGCTGCACGCCGTCACCTTCGCCAACATCTGGGCGGGTTATCCGCTCTTCATGGTCAGCCTGCTCGC
GGGTTTGCAGGGCATTCCCAAGGATTTCTACGAGGCCGCCGACATCGACGGGGCGAAGGCCTACCAGAAGCTGATCTTCA
TCACCATCCCGCAGCTGATGCCGATCATCATCAGTATCTCGCTGCTCGACTTCATCTGGACCATGCAGGTCTTCCCGTTA
ATCTGGATAACGACGGGCGGTGGCCCGATTTACTCGACCGAGGTCCTCAGCACCTACACCTACAAGCTGGCGTTTTCGAG
CTACAACCTGTCACAGGCCTCGGCGAGCGCTGTGGTCATCTTGTTGATCTCTCTCGGCCTGACGCTGTTCTATATTCGCT
ATCAAAAGGCTCGGTAG

Upstream 100 bases:

>100_bases
GGCCTGACTTCGGGCCACCCGGCAACAACGGATCGGCAATTTGAGATGGCTCAGTTTCCGAAGTTTACCTTCTCTTGAAG
GCGTATCCCAAGGTTGGCAC

Downstream 100 bases:

>100_bases
TAACCATGAGGAAAAGGCATACGTCGAAAGACAGGCTGATCACCGTCGCGCTCCATGTAGCGCTAGCAGCGGGACTCTTC
TTCGCGGCATTCCCGATCTA

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTRQKRSHHKLKRAVAPYLYLSPSLLIIGLLMLLPMVTVIAYSFQNSAVLRRDPTFAGLKHYQAIFDDPVFWASLWHTLY
FTCMSVIFHMTIGMVFALMLNSDRINPTLRNILRVLYILPWLFTAVIIAVIWRLLLEPNGVVNSILMQIGIIGSKIEWFS
SPETALHAVTFANIWAGYPLFMVSLLAGLQGIPKDFYEAADIDGAKAYQKLIFITIPQLMPIIISISLLDFIWTMQVFPL
IWITTGGGPIYSTEVLSTYTYKLAFSSYNLSQASASAVVILLISLGLTLFYIRYQKAR

Sequences:

>Translated_298_residues
MTRQKRSHHKLKRAVAPYLYLSPSLLIIGLLMLLPMVTVIAYSFQNSAVLRRDPTFAGLKHYQAIFDDPVFWASLWHTLY
FTCMSVIFHMTIGMVFALMLNSDRINPTLRNILRVLYILPWLFTAVIIAVIWRLLLEPNGVVNSILMQIGIIGSKIEWFS
SPETALHAVTFANIWAGYPLFMVSLLAGLQGIPKDFYEAADIDGAKAYQKLIFITIPQLMPIIISISLLDFIWTMQVFPL
IWITTGGGPIYSTEVLSTYTYKLAFSSYNLSQASASAVVILLISLGLTLFYIRYQKAR
>Mature_297_residues
TRQKRSHHKLKRAVAPYLYLSPSLLIIGLLMLLPMVTVIAYSFQNSAVLRRDPTFAGLKHYQAIFDDPVFWASLWHTLYF
TCMSVIFHMTIGMVFALMLNSDRINPTLRNILRVLYILPWLFTAVIIAVIWRLLLEPNGVVNSILMQIGIIGSKIEWFSS
PETALHAVTFANIWAGYPLFMVSLLAGLQGIPKDFYEAADIDGAKAYQKLIFITIPQLMPIIISISLLDFIWTMQVFPLI
WITTGGGPIYSTEVLSTYTYKLAFSSYNLSQASASAVVILLISLGLTLFYIRYQKAR

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=259, Percent_Identity=30.1158301158301, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789861, Length=284, Percent_Identity=25.7042253521127, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790465, Length=258, Percent_Identity=29.0697674418605, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33756; Mature: 33625

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQKRSHHKLKRAVAPYLYLSPSLLIIGLLMLLPMVTVIAYSFQNSAVLRRDPTFAGLK
CCCCHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHH
HYQAIFDDPVFWASLWHTLYFTCMSVIFHMTIGMVFALMLNSDRINPTLRNILRVLYILP
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
WLFTAVIIAVIWRLLLEPNGVVNSILMQIGIIGSKIEWFSSPETALHAVTFANIWAGYPL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCHH
FMVSLLAGLQGIPKDFYEAADIDGAKAYQKLIFITIPQLMPIIISISLLDFIWTMQVFPL
HHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
IWITTGGGPIYSTEVLSTYTYKLAFSSYNLSQASASAVVILLISLGLTLFYIRYQKAR
EEEECCCCCEEHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRQKRSHHKLKRAVAPYLYLSPSLLIIGLLMLLPMVTVIAYSFQNSAVLRRDPTFAGLK
CCCHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHH
HYQAIFDDPVFWASLWHTLYFTCMSVIFHMTIGMVFALMLNSDRINPTLRNILRVLYILP
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
WLFTAVIIAVIWRLLLEPNGVVNSILMQIGIIGSKIEWFSSPETALHAVTFANIWAGYPL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCHH
FMVSLLAGLQGIPKDFYEAADIDGAKAYQKLIFITIPQLMPIIISISLLDFIWTMQVFPL
HHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
IWITTGGGPIYSTEVLSTYTYKLAFSSYNLSQASASAVVILLISLGLTLFYIRYQKAR
EEEECCCCCEEHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA