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The map label for this gene is potD-A [H]

Identifier: 13475989

GI number: 13475989

Start: 5936401

End: 5937426

Strand: Reverse

Name: potD-A [H]

Synonym: mll7188

Alternate gene names: 13475989

Gene position: 5937426-5936401 (Counterclockwise)

Preceding gene: 13475990

Following gene: 13475988

Centisome position: 84.39

GC content: 60.23

Gene sequence:

>1026_bases
ATGGGACTGAAGAAAGCCTTTCTAAGACTAGCGACAATCGGCCTCGGCATCGGCCTGATGACATCGGCGGCGCTGGCCGC
GAACCTTCGGGTGCTTGCGTGGGACGGCTATGCCGATCCGGACTGGGTGAAGGATTTCACCGCGGCAACCGGCATCGGCG
TCGATGTCGTCTTCATCGGCAGCGATGACGAGATCTGGGCCAAGATCAAGGGCAGCGAAGGCCAGGATTTCGATGTCTTC
GCCGTCAACACCGCCCAGCTGCAGCGCTACATCAAGGCCGATCTGGTGTCGCCGATCGACATCACCAAGCTGTCGAACCA
GAAGGAGGTGCTGCCGCGCTTCCGCGATCTATCGCAGGTCAGCGGCGACACCAAGGACGGCAAGGTCTACGGCATTCCGT
TCTGCTTCGATTCCATCGGGCTGATCTACGACACGGACAAGGTCAAGCCGGCGCCGACCTCGATGTCGGTGCTGTGGGAT
CCGGCCTACAAAGGCAAGGTCCTGGCCTACGACAATGGCGAGCACAATTTCTCGTTCACCGCTCTGACGCTTGGCTACAA
GGATCCGTTCAATCTCGACGCGGAGCAGATGGCGGCGGTCAAGGCCAAGCTGGTCGAACTCAAGCGCAATGTGCTGAGCT
TCTACACCACCGCCGACGAGGCGCAGCAGATCTACCAGAACAATGACGTTGCCCTGATCTGGGCCAATTATGGCCAGCAG
CAGGTCAAGGCGCTGCAGAAGATCGGCGCCCATGTCGCCTACGTCAATCCGAGTGAAGGCGCTCTGGCCTGGCTCGACAA
TTGGGTGATCTCCAAGGGCGTGCGCGACAATGCGGCGGCCGAGAAATGGATCGACTTCATGCTGACGAAGAAGGTCAGCG
GCGAGCTTTCCGAGCGTACCGGTTTCGGCAACACCGTGGTCGAGTCAAGCAGCGCCGGCAGCAACGACAAGCTGGTCTGG
CTCAACAATGTCGAGGACCCGCTGAAGCGGTCCGACATGTGGAACGAGATCAAGGCGACGCCCTGA

Upstream 100 bases:

>100_bases
GATGGTGTCGGTGCCGGACGAGGGACTGGTCACCGTCACCCCGCTGTGACGGCAGAGGTCCGAAATCACGGTCCACCAGA
ACGACAATGGGAGATTAAAA

Downstream 100 bases:

>100_bases
TCCTTTCCGCAGCCCGACCTAAAAGGACCCGGCGGTCCGGACGTTCCGGACCGCCGCAGCGTATGCGAGAATAGCTAATG
AGCCAGAACACCGACCTGCT

Product: ABC transporter, binding protein

Products: NA

Alternate protein names: SPBP [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MGLKKAFLRLATIGLGIGLMTSAALAANLRVLAWDGYADPDWVKDFTAATGIGVDVVFIGSDDEIWAKIKGSEGQDFDVF
AVNTAQLQRYIKADLVSPIDITKLSNQKEVLPRFRDLSQVSGDTKDGKVYGIPFCFDSIGLIYDTDKVKPAPTSMSVLWD
PAYKGKVLAYDNGEHNFSFTALTLGYKDPFNLDAEQMAAVKAKLVELKRNVLSFYTTADEAQQIYQNNDVALIWANYGQQ
QVKALQKIGAHVAYVNPSEGALAWLDNWVISKGVRDNAAAEKWIDFMLTKKVSGELSERTGFGNTVVESSSAGSNDKLVW
LNNVEDPLKRSDMWNEIKATP

Sequences:

>Translated_341_residues
MGLKKAFLRLATIGLGIGLMTSAALAANLRVLAWDGYADPDWVKDFTAATGIGVDVVFIGSDDEIWAKIKGSEGQDFDVF
AVNTAQLQRYIKADLVSPIDITKLSNQKEVLPRFRDLSQVSGDTKDGKVYGIPFCFDSIGLIYDTDKVKPAPTSMSVLWD
PAYKGKVLAYDNGEHNFSFTALTLGYKDPFNLDAEQMAAVKAKLVELKRNVLSFYTTADEAQQIYQNNDVALIWANYGQQ
QVKALQKIGAHVAYVNPSEGALAWLDNWVISKGVRDNAAAEKWIDFMLTKKVSGELSERTGFGNTVVESSSAGSNDKLVW
LNNVEDPLKRSDMWNEIKATP
>Mature_340_residues
GLKKAFLRLATIGLGIGLMTSAALAANLRVLAWDGYADPDWVKDFTAATGIGVDVVFIGSDDEIWAKIKGSEGQDFDVFA
VNTAQLQRYIKADLVSPIDITKLSNQKEVLPRFRDLSQVSGDTKDGKVYGIPFCFDSIGLIYDTDKVKPAPTSMSVLWDP
AYKGKVLAYDNGEHNFSFTALTLGYKDPFNLDAEQMAAVKAKLVELKRNVLSFYTTADEAQQIYQNNDVALIWANYGQQQ
VKALQKIGAHVAYVNPSEGALAWLDNWVISKGVRDNAAAEKWIDFMLTKKVSGELSERTGFGNTVVESSSAGSNDKLVWL
NNVEDPLKRSDMWNEIKATP

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine. Polyamine binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=341, Percent_Identity=28.1524926686217, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787367, Length=277, Percent_Identity=26.7148014440433, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787078, Length=308, Percent_Identity=25.974025974026, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 37553; Mature: 37422

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKKAFLRLATIGLGIGLMTSAALAANLRVLAWDGYADPDWVKDFTAATGIGVDVVFIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
SDDEIWAKIKGSEGQDFDVFAVNTAQLQRYIKADLVSPIDITKLSNQKEVLPRFRDLSQV
CCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
SGDTKDGKVYGIPFCFDSIGLIYDTDKVKPAPTSMSVLWDPAYKGKVLAYDNGEHNFSFT
CCCCCCCEEEEEEHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEE
ALTLGYKDPFNLDAEQMAAVKAKLVELKRNVLSFYTTADEAQQIYQNNDVALIWANYGQQ
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHH
QVKALQKIGAHVAYVNPSEGALAWLDNWVISKGVRDNAAAEKWIDFMLTKKVSGELSERT
HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHC
GFGNTVVESSSAGSNDKLVWLNNVEDPLKRSDMWNEIKATP
CCCCCEEECCCCCCCCCEEEECCCCCHHHHHCCHHHHCCCC
>Mature Secondary Structure 
GLKKAFLRLATIGLGIGLMTSAALAANLRVLAWDGYADPDWVKDFTAATGIGVDVVFIG
CHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEC
SDDEIWAKIKGSEGQDFDVFAVNTAQLQRYIKADLVSPIDITKLSNQKEVLPRFRDLSQV
CCCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH
SGDTKDGKVYGIPFCFDSIGLIYDTDKVKPAPTSMSVLWDPAYKGKVLAYDNGEHNFSFT
CCCCCCCEEEEEEHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCCCEEEE
ALTLGYKDPFNLDAEQMAAVKAKLVELKRNVLSFYTTADEAQQIYQNNDVALIWANYGQQ
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHH
QVKALQKIGAHVAYVNPSEGALAWLDNWVISKGVRDNAAAEKWIDFMLTKKVSGELSERT
HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHC
GFGNTVVESSSAGSNDKLVWLNNVEDPLKRSDMWNEIKATP
CCCCCEEECCCCCCCCCEEEECCCCCHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]