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The map label for this gene is rbsC [H]

Identifier: 13475899

GI number: 13475899

Start: 5842928

End: 5843929

Strand: Reverse

Name: rbsC [H]

Synonym: mll7080

Alternate gene names: 13475899

Gene position: 5843929-5842928 (Counterclockwise)

Preceding gene: 13475900

Following gene: 13475898

Centisome position: 83.06

GC content: 62.28

Gene sequence:

>1002_bases
ATGAACAGCCTCGAGCTTCGCGCATCGAAAGCGCAGACCGACGCCAGGGGCGCTTCCACGCGCCTTGTGGAGCGCCTTGG
CGTTCACAACATCAGCCTTCTGGTCGCGCTCGCCATTCTCATCATCATCTTCGGCTCGTTGCGCGGCGACGTGTTCTTCT
CGAGCCGAAACCTGCTCAACATCGGCCTTGGCGTCACCATTCTCGGCGTGCTGGCGATGAGCCAGACCGTGGTCATCGTC
GCCGGCGGTCTCGATATCGCTGTCGGCGCCACTGTCGGTCTAACCACAGTCTCGACGGCAATGGCCATCCAGGCGACCGG
GTCGCCGGCGGCCGGCATCGTTGCCGGCCTGGTGCTTGGTGGTCTTGCCGGTCTCGTCAACGGCCTCATCATCACCTACG
GGCGCGTCAACGCGGTCATTGCCACGCTCGGCACCATGGCGATCTTTCGCGGCATCGCCTTCATCATGTCCGACGGCCAG
TCAATCGCCATCTTCAGCGATACGTTCCGGTTCATCGGCATTGGACGCATCCTCGGCCTGCCGTTGCTGGTCTGGATTTT
GGTGCTGACCGCGATCGCATTCCACCTCTTCCTCGCGCGTTCGATCGTCGGCCGCAACATCTATGCACTGGGCGGCAATC
CCGTTGTCGCCCGCTTCTCGGGCATCAACATCAACCGCTACCGCGTCGGCATCTACATCATGAGTGGTGTTGCCGCCGGA
TTGGCCGGGATCCTGCTGGCCGCCCGTACCGGTTCGGGTCAGCCCGTATCCGGGTCCCAGGGCCTGGAACTCGAGGCGAT
AACGGCGGCCGTGCTGGGTGGCTGTGCCCTGCAGGGCGGCAAGGGCACGATTGTCGGCGCGCTGCTCGGTGTCGCCATCA
TTGGCGTGCTCAACAACGGAATGATACTGACGTCCGTGCCAACCTTCTATCAATTGCTGGCAAAAGGCTCACTGCTGATC
CTTGCTGTGGTCATTGCCGAGTACCACTTGAACAGGACATGA

Upstream 100 bases:

>100_bases
GCCGCATCACGGCCGAGCTTGCCCGCCCCGACATCGACGAAGCGACGATCCTCAAACACGCCATGCCGCAATCCGCATCA
TCGCCTGGAGACTACATTCA

Downstream 100 bases:

>100_bases
CGATGGACGCGGCGACCGCTGTGAGCGATCAAGGCAAGCAGGACCTTCCTGCCGGAGATGGCGCCACACTGTCCCTGAAG
GATCGCATCGCACGCGATCT

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNSLELRASKAQTDARGASTRLVERLGVHNISLLVALAILIIIFGSLRGDVFFSSRNLLNIGLGVTILGVLAMSQTVVIV
AGGLDIAVGATVGLTTVSTAMAIQATGSPAAGIVAGLVLGGLAGLVNGLIITYGRVNAVIATLGTMAIFRGIAFIMSDGQ
SIAIFSDTFRFIGIGRILGLPLLVWILVLTAIAFHLFLARSIVGRNIYALGGNPVVARFSGININRYRVGIYIMSGVAAG
LAGILLAARTGSGQPVSGSQGLELEAITAAVLGGCALQGGKGTIVGALLGVAIIGVLNNGMILTSVPTFYQLLAKGSLLI
LAVVIAEYHLNRT

Sequences:

>Translated_333_residues
MNSLELRASKAQTDARGASTRLVERLGVHNISLLVALAILIIIFGSLRGDVFFSSRNLLNIGLGVTILGVLAMSQTVVIV
AGGLDIAVGATVGLTTVSTAMAIQATGSPAAGIVAGLVLGGLAGLVNGLIITYGRVNAVIATLGTMAIFRGIAFIMSDGQ
SIAIFSDTFRFIGIGRILGLPLLVWILVLTAIAFHLFLARSIVGRNIYALGGNPVVARFSGININRYRVGIYIMSGVAAG
LAGILLAARTGSGQPVSGSQGLELEAITAAVLGGCALQGGKGTIVGALLGVAIIGVLNNGMILTSVPTFYQLLAKGSLLI
LAVVIAEYHLNRT
>Mature_333_residues
MNSLELRASKAQTDARGASTRLVERLGVHNISLLVALAILIIIFGSLRGDVFFSSRNLLNIGLGVTILGVLAMSQTVVIV
AGGLDIAVGATVGLTTVSTAMAIQATGSPAAGIVAGLVLGGLAGLVNGLIITYGRVNAVIATLGTMAIFRGIAFIMSDGQ
SIAIFSDTFRFIGIGRILGLPLLVWILVLTAIAFHLFLARSIVGRNIYALGGNPVVARFSGININRYRVGIYIMSGVAAG
LAGILLAARTGSGQPVSGSQGLELEAITAAVLGGCALQGGKGTIVGALLGVAIIGVLNNGMILTSVPTFYQLLAKGSLLI
LAVVIAEYHLNRT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=296, Percent_Identity=40.5405405405405, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI145693152, Length=273, Percent_Identity=38.8278388278388, Blast_Score=170, Evalue=2e-43,
Organism=Escherichia coli, GI1790524, Length=288, Percent_Identity=37.8472222222222, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1788896, Length=316, Percent_Identity=33.2278481012658, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=33.015873015873, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789992, Length=139, Percent_Identity=42.4460431654676, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87082395, Length=283, Percent_Identity=33.5689045936396, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787793, Length=280, Percent_Identity=31.7857142857143, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI145693214, Length=259, Percent_Identity=33.976833976834, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788471, Length=274, Percent_Identity=35.7664233576642, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33988; Mature: 33988

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLELRASKAQTDARGASTRLVERLGVHNISLLVALAILIIIFGSLRGDVFFSSRNLLN
CCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEE
IGLGVTILGVLAMSQTVVIVAGGLDIAVGATVGLTTVSTAMAIQATGSPAAGIVAGLVLG
ECHHHHHHHHHHHCCEEEEEECCCEEEECCHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
GLAGLVNGLIITYGRVNAVIATLGTMAIFRGIAFIMSDGQSIAIFSDTFRFIGIGRILGL
HHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH
PLLVWILVLTAIAFHLFLARSIVGRNIYALGGNPVVARFSGININRYRVGIYIMSGVAAG
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEEEEEEHHHHHHH
LAGILLAARTGSGQPVSGSQGLELEAITAAVLGGCALQGGKGTIVGALLGVAIIGVLNNG
HHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCC
MILTSVPTFYQLLAKGSLLILAVVIAEYHLNRT
EEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNSLELRASKAQTDARGASTRLVERLGVHNISLLVALAILIIIFGSLRGDVFFSSRNLLN
CCCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEE
IGLGVTILGVLAMSQTVVIVAGGLDIAVGATVGLTTVSTAMAIQATGSPAAGIVAGLVLG
ECHHHHHHHHHHHCCEEEEEECCCEEEECCHHHHHHHHHHEEEEECCCCHHHHHHHHHHH
GLAGLVNGLIITYGRVNAVIATLGTMAIFRGIAFIMSDGQSIAIFSDTFRFIGIGRILGL
HHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHH
PLLVWILVLTAIAFHLFLARSIVGRNIYALGGNPVVARFSGININRYRVGIYIMSGVAAG
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCEEEEEEEEEEHHHHHHH
LAGILLAARTGSGQPVSGSQGLELEAITAAVLGGCALQGGKGTIVGALLGVAIIGVLNNG
HHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCC
MILTSVPTFYQLLAKGSLLILAVVIAEYHLNRT
EEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]