Click here to switch to the map view.

The map label for this gene is lsrC [H]

Identifier: 13475845

GI number: 13475845

Start: 5781353

End: 5782378

Strand: Reverse

Name: lsrC [H]

Synonym: mll7017

Alternate gene names: 13475845

Gene position: 5782378-5781353 (Counterclockwise)

Preceding gene: 13475846

Following gene: 13475844

Centisome position: 82.18

GC content: 66.08

Gene sequence:

>1026_bases
ATGAACGCGTTGTCCGCCTTCACTCTTTGGGCCCAGAACAACCGCTGGGTCTGGGCATCGATCGGCGTGCTCCTGCTCTG
GCTCGTGCTCTCCGTGGTCACCAACCGGTTCAGCCTGTCCAGCCTGTCAGGCATCGTGCTGTCGGCCTCGTTCCTGACCG
TCGTCGGCATCGGTCAGATGTTCGTCGTCACCACAGGGCGCGGCAACATCGATCTTTCCGTCGCCTCGGTGATCACGCTC
AGCGCCTTCGTCGCGCTGCTCACCATCAAGGGCCAGGATGCCAATCTTGCCATTGGCGTCACGGCTGCCGTCCTGCTCGG
TCTCGCGGTCGGGCTGCTCAATTCGCTGCTTGTCGTCGGCCTCGGCATTCCGGCGATTATCGCGACGCTCGCCACCGGCT
ATGTGCTGGCGACCGCGACGCTGCTGTCGAACAAGGCAATCCCCGGCTTTGCCGTCAGCCCGGCGCTCAAGGATCTGGCG
ACGGGCCGCATCTCGGGCGTTCCGATCATGGCCATCATCGCCATCCTCGGCGTAGCGGCGGCTTCCTTTGTGCTGCGCTA
CACCGTGTTCGGGCAGCTCCTGTCGGCGGTCGGCCAGAACCGCGCGGCCGCCCGGCTCGCCGCCATCAGGAATGGCCGGG
TGATCGCGGCGGCCTTCATCATCTCGTCGGTGCTGGCCTCGATCGATGGCCTGCTGCTCGGCGCCTATATCGGCGGCGCC
TTCCTCGAAATGGGCCAGCCCTATCTGTTGCAGTCGATCGCCGCCGTGGTGCTCGGCGGCACGCTGATCTTCGGCGGCTC
GGCGACCGCGCTCGGCACCCTGTTCGCCAGCATCCTGCTCATCCTGATCGTGACGACCATGCAGATTATCGGGCTGCCGC
CAGGCGCCCAGGACATCGTCCAGGGCATCGTCGTCATCTTTGTCCTGGCGCTTGCCGGTCGACAGGTATTGGCGCGGCGC
ACCACTGCCGAGCCCGCAGATGGAGCGACGCCGAAGGCAAAGGCGGCCGCGTCGTTGCCGGAGTGA

Upstream 100 bases:

>100_bases
CGCTCAATGTCAGCAGCGACTTCAACGCCGCGACGCAAGGGCTGATCCTGATCGCGCTCCTGACGTTGCGCGGCCTGACC
GCGGACCGCGAGAGCGAACA

Downstream 100 bases:

>100_bases
CAGCCAGGCCGACAATTCCACTTGCCAAATTATGGTAGAGTGATCATACCAGTATATAAGATGACGATCGCCGACGATCG
CCTAGGGTTCAAGGAGCAAA

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MNALSAFTLWAQNNRWVWASIGVLLLWLVLSVVTNRFSLSSLSGIVLSASFLTVVGIGQMFVVTTGRGNIDLSVASVITL
SAFVALLTIKGQDANLAIGVTAAVLLGLAVGLLNSLLVVGLGIPAIIATLATGYVLATATLLSNKAIPGFAVSPALKDLA
TGRISGVPIMAIIAILGVAAASFVLRYTVFGQLLSAVGQNRAAARLAAIRNGRVIAAAFIISSVLASIDGLLLGAYIGGA
FLEMGQPYLLQSIAAVVLGGTLIFGGSATALGTLFASILLILIVTTMQIIGLPPGAQDIVQGIVVIFVLALAGRQVLARR
TTAEPADGATPKAKAAASLPE

Sequences:

>Translated_341_residues
MNALSAFTLWAQNNRWVWASIGVLLLWLVLSVVTNRFSLSSLSGIVLSASFLTVVGIGQMFVVTTGRGNIDLSVASVITL
SAFVALLTIKGQDANLAIGVTAAVLLGLAVGLLNSLLVVGLGIPAIIATLATGYVLATATLLSNKAIPGFAVSPALKDLA
TGRISGVPIMAIIAILGVAAASFVLRYTVFGQLLSAVGQNRAAARLAAIRNGRVIAAAFIISSVLASIDGLLLGAYIGGA
FLEMGQPYLLQSIAAVVLGGTLIFGGSATALGTLFASILLILIVTTMQIIGLPPGAQDIVQGIVVIFVLALAGRQVLARR
TTAEPADGATPKAKAAASLPE
>Mature_341_residues
MNALSAFTLWAQNNRWVWASIGVLLLWLVLSVVTNRFSLSSLSGIVLSASFLTVVGIGQMFVVTTGRGNIDLSVASVITL
SAFVALLTIKGQDANLAIGVTAAVLLGLAVGLLNSLLVVGLGIPAIIATLATGYVLATATLLSNKAIPGFAVSPALKDLA
TGRISGVPIMAIIAILGVAAASFVLRYTVFGQLLSAVGQNRAAARLAAIRNGRVIAAAFIISSVLASIDGLLLGAYIGGA
FLEMGQPYLLQSIAAVVLGGTLIFGGSATALGTLFASILLILIVTTMQIIGLPPGAQDIVQGIVVIFVLALAGRQVLARR
TTAEPADGATPKAKAAASLPE

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=289, Percent_Identity=30.7958477508651, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=31.0810810810811, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788896, Length=200, Percent_Identity=32, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787793, Length=308, Percent_Identity=30.5194805194805, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=28.7066246056782, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=266, Percent_Identity=29.3233082706767, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34609; Mature: 34609

Theoretical pI: Translated: 11.00; Mature: 11.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALSAFTLWAQNNRWVWASIGVLLLWLVLSVVTNRFSLSSLSGIVLSASFLTVVGIGQM
CCCHHHEEEEECCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE
FVVTTGRGNIDLSVASVITLSAFVALLTIKGQDANLAIGVTAAVLLGLAVGLLNSLLVVG
EEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LGIPAIIATLATGYVLATATLLSNKAIPGFAVSPALKDLATGRISGVPIMAIIAILGVAA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
ASFVLRYTVFGQLLSAVGQNRAAARLAAIRNGRVIAAAFIISSVLASIDGLLLGAYIGGA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEMGQPYLLQSIAAVVLGGTLIFGGSATALGTLFASILLILIVTTMQIIGLPPGAQDIV
HHHCCCHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QGIVVIFVLALAGRQVLARRTTAEPADGATPKAKAAASLPE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MNALSAFTLWAQNNRWVWASIGVLLLWLVLSVVTNRFSLSSLSGIVLSASFLTVVGIGQM
CCCHHHEEEEECCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE
FVVTTGRGNIDLSVASVITLSAFVALLTIKGQDANLAIGVTAAVLLGLAVGLLNSLLVVG
EEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
LGIPAIIATLATGYVLATATLLSNKAIPGFAVSPALKDLATGRISGVPIMAIIAILGVAA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH
ASFVLRYTVFGQLLSAVGQNRAAARLAAIRNGRVIAAAFIISSVLASIDGLLLGAYIGGA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEMGQPYLLQSIAAVVLGGTLIFGGSATALGTLFASILLILIVTTMQIIGLPPGAQDIV
HHHCCCHHHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
QGIVVIFVLALAGRQVLARRTTAEPADGATPKAKAAASLPE
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA