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The map label for this gene is dppA [C]

Identifier: 13475828

GI number: 13475828

Start: 5758729

End: 5760291

Strand: Direct

Name: dppA [C]

Synonym: mlr6997

Alternate gene names: 13475828

Gene position: 5758729-5760291 (Clockwise)

Preceding gene: 13475823

Following gene: 13475829

Centisome position: 81.85

GC content: 60.72

Gene sequence:

>1563_bases
ATGAGCGCTTCCAGCATGTTATCGAGTCTCTCACGCCGTGATCTTCTTCAAGCGGGTGTGGCTCTAGGCCTTGTCGCAGC
CGCAGGCCCGCTGGCGTCACCGGCCGCGGCGCAAACGCCAGTGCGCGGCGGACAGTTGCGGCTGGGGCTCGATGGCGGCG
CTTCCGCCGACACGCTCGACCCGGCCCTGGCGTCCGCCAGCGTCAATTTTGTGATCGCGCATTGCTGGGGCGATACGCTG
GTTGAATCCGATCCCAAAACGGGCGCGGCGGTTCCCTCGCTGGCCGAATCCTGGTCTCCATCGGCCGACGCCAAGGAATG
GACCTTCAAGATACGCAAAGACATTCGTTTCCACGATGGCAAGGCATTAACTGTTAGCGATGCAGTCGAGACCTTGCGCC
GCCACGCGGGAAAGAAATCGCAATCGGGCGCACTCGGCCTGCTGTCCGGGATAGACCGCATCGAGGAACGCTCGGGCGAC
ATGGTGGTGACGCTGAAGGAAGCCAATGCTGACCTGCCGCTGATATTTACGGATTATCATCTTCAGATACAGCCGGGCGG
CGGCGTGGAAAAACCTGCGGCAGCGATCGGCACCGGTCCCTACAAGCTGGCTGCATTCGAGCCGGGCATTCGCGCCGCTT
TCGAAAAAAACGAGGACGACTGGCGCCAGGACCGGGGCTACGTCGACAGCGTACTTATTACCGTGATGAACGACCTGACC
GCGCGGACCAGCGCCTTGCGGTCCGGTCAGGTCGATTTCATCAGCACCGTCGAACCCAAGGTCGTGCCGCTGCTGAAGCG
GGTTCCGGGCGTCGAGATCCTGCGCACCTCCGGCAAGGGGTTCTATTCCTTCCTGATGCATTGCGACACCGCGCCCTTCG
ACAACAATGATCTGCGTCTGGCGCTCAAATATGCGATAGACCGCGAGGCTATCCTCAAGGGGGTTCTGGGCGGGTTCGGC
ACCATTGGCAATGATTACCCGATCAACGCCAACTATGCGCTCGCGCCTGCCGACATAGAGCAGCGCAATTACGATCCCGA
CAAGGCTGCATTCCACTTCAAGAAGTCCGGCCTTCAAGATCCAATCCTGCTGCGCACCTCGGAAGCGGCGTTCCCCGGCG
CAGTCGATGCGGCCCAGCTTTTCCAATTGAGCGCGGAAAAGGCCGGTATCAAGATCAATGTGCAGCGCGAGCCGAGTGAC
GGCTACTGGTCGGAAGTCTGGAACGTCAAGCCGTTCTGCACCTCCTTTTGGGGTGGTCGTCCGACGCAGGATGCGCGCTA
TTCCACGTCCTACGTTTCCAACGCGGAGTGGAACGACACCCGCTTCAAGCGGCCCGACTTCGACAAGATGGTGGTTCAGG
CGCGCGGTGAACTGGATGAGACCAAGCGGCGCGTACTCTACCGTGACATGGCGCTGATGGTGCGAGATGAGGGCGGCCTG
ATACTGCCGGTGTTCAACGACTTCATCAACGCCTGCACGAGCCATCTCAAGGGTTTTGTTCCCGATATTGGCAATGACTT
TTCCAATGGCCGCATCGCCAGCCGGGTCTGGCTGGAGGCTTGA

Upstream 100 bases:

>100_bases
GCCAGTATAAACTCGCTTAAAAACGCTTCAAGCGACGAAATTGCGCTGACCCGGGCTCGGCCTAGTATCGGCCACAAGGC
TTCACTCCAAGGGGAACCCA

Downstream 100 bases:

>100_bases
ACCGGGAAATGATCGTGCCTTTCCGGCGGCGGGATAGTGTGCTTGCCACCGCGTGGAGGTTTTGTGGTTGATCGCATGAC
GAACAGGAATGTCCGTGTCA

Product: ABC transporter, periplasmic binding-protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 520; Mature: 519

Protein sequence:

>520_residues
MSASSMLSSLSRRDLLQAGVALGLVAAAGPLASPAAAQTPVRGGQLRLGLDGGASADTLDPALASASVNFVIAHCWGDTL
VESDPKTGAAVPSLAESWSPSADAKEWTFKIRKDIRFHDGKALTVSDAVETLRRHAGKKSQSGALGLLSGIDRIEERSGD
MVVTLKEANADLPLIFTDYHLQIQPGGGVEKPAAAIGTGPYKLAAFEPGIRAAFEKNEDDWRQDRGYVDSVLITVMNDLT
ARTSALRSGQVDFISTVEPKVVPLLKRVPGVEILRTSGKGFYSFLMHCDTAPFDNNDLRLALKYAIDREAILKGVLGGFG
TIGNDYPINANYALAPADIEQRNYDPDKAAFHFKKSGLQDPILLRTSEAAFPGAVDAAQLFQLSAEKAGIKINVQREPSD
GYWSEVWNVKPFCTSFWGGRPTQDARYSTSYVSNAEWNDTRFKRPDFDKMVVQARGELDETKRRVLYRDMALMVRDEGGL
ILPVFNDFINACTSHLKGFVPDIGNDFSNGRIASRVWLEA

Sequences:

>Translated_520_residues
MSASSMLSSLSRRDLLQAGVALGLVAAAGPLASPAAAQTPVRGGQLRLGLDGGASADTLDPALASASVNFVIAHCWGDTL
VESDPKTGAAVPSLAESWSPSADAKEWTFKIRKDIRFHDGKALTVSDAVETLRRHAGKKSQSGALGLLSGIDRIEERSGD
MVVTLKEANADLPLIFTDYHLQIQPGGGVEKPAAAIGTGPYKLAAFEPGIRAAFEKNEDDWRQDRGYVDSVLITVMNDLT
ARTSALRSGQVDFISTVEPKVVPLLKRVPGVEILRTSGKGFYSFLMHCDTAPFDNNDLRLALKYAIDREAILKGVLGGFG
TIGNDYPINANYALAPADIEQRNYDPDKAAFHFKKSGLQDPILLRTSEAAFPGAVDAAQLFQLSAEKAGIKINVQREPSD
GYWSEVWNVKPFCTSFWGGRPTQDARYSTSYVSNAEWNDTRFKRPDFDKMVVQARGELDETKRRVLYRDMALMVRDEGGL
ILPVFNDFINACTSHLKGFVPDIGNDFSNGRIASRVWLEA
>Mature_519_residues
SASSMLSSLSRRDLLQAGVALGLVAAAGPLASPAAAQTPVRGGQLRLGLDGGASADTLDPALASASVNFVIAHCWGDTLV
ESDPKTGAAVPSLAESWSPSADAKEWTFKIRKDIRFHDGKALTVSDAVETLRRHAGKKSQSGALGLLSGIDRIEERSGDM
VVTLKEANADLPLIFTDYHLQIQPGGGVEKPAAAIGTGPYKLAAFEPGIRAAFEKNEDDWRQDRGYVDSVLITVMNDLTA
RTSALRSGQVDFISTVEPKVVPLLKRVPGVEILRTSGKGFYSFLMHCDTAPFDNNDLRLALKYAIDREAILKGVLGGFGT
IGNDYPINANYALAPADIEQRNYDPDKAAFHFKKSGLQDPILLRTSEAAFPGAVDAAQLFQLSAEKAGIKINVQREPSDG
YWSEVWNVKPFCTSFWGGRPTQDARYSTSYVSNAEWNDTRFKRPDFDKMVVQARGELDETKRRVLYRDMALMVRDEGGLI
LPVFNDFINACTSHLKGFVPDIGNDFSNGRIASRVWLEA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=554, Percent_Identity=22.3826714801444, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787495, Length=527, Percent_Identity=23.5294117647059, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1789887, Length=541, Percent_Identity=24.2144177449168, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787052, Length=531, Percent_Identity=23.728813559322, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081878, Length=466, Percent_Identity=24.4635193133047, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56503; Mature: 56372

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASSMLSSLSRRDLLQAGVALGLVAAAGPLASPAAAQTPVRGGQLRLGLDGGASADTLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
PALASASVNFVIAHCWGDTLVESDPKTGAAVPSLAESWSPSADAKEWTFKIRKDIRFHDG
HHHHCCCEEEEEEEECCCHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHEECCCEECCC
KALTVSDAVETLRRHAGKKSQSGALGLLSGIDRIEERSGDMVVTLKEANADLPLIFTDYH
CEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEE
LQIQPGGGVEKPAAAIGTGPYKLAAFEPGIRAAFEKNEDDWRQDRGYVDSVLITVMNDLT
EEECCCCCCCCCCHHHCCCCEEEEEECCCHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHH
ARTSALRSGQVDFISTVEPKVVPLLKRVPGVEILRTSGKGFYSFLMHCDTAPFDNNDLRL
HHHHHHHCCCCEEEECCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCEEE
ALKYAIDREAILKGVLGGFGTIGNDYPINANYALAPADIEQRNYDPDKAAFHFKKSGLQD
EEEEHHCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHHHCCCCC
PILLRTSEAAFPGAVDAAQLFQLSAEKAGIKINVQREPSDGYWSEVWNVKPFCTSFWGGR
CEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCHHHHHHCCCC
PTQDARYSTSYVSNAEWNDTRFKRPDFDKMVVQARGELDETKRRVLYRDMALMVRDEGGL
CCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEEEECCCCE
ILPVFNDFINACTSHLKGFVPDIGNDFSNGRIASRVWLEA
EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure 
SASSMLSSLSRRDLLQAGVALGLVAAAGPLASPAAAQTPVRGGQLRLGLDGGASADTLD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
PALASASVNFVIAHCWGDTLVESDPKTGAAVPSLAESWSPSADAKEWTFKIRKDIRFHDG
HHHHCCCEEEEEEEECCCHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHEECCCEECCC
KALTVSDAVETLRRHAGKKSQSGALGLLSGIDRIEERSGDMVVTLKEANADLPLIFTDYH
CEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEE
LQIQPGGGVEKPAAAIGTGPYKLAAFEPGIRAAFEKNEDDWRQDRGYVDSVLITVMNDLT
EEECCCCCCCCCCHHHCCCCEEEEEECCCHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHH
ARTSALRSGQVDFISTVEPKVVPLLKRVPGVEILRTSGKGFYSFLMHCDTAPFDNNDLRL
HHHHHHHCCCCEEEECCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCEEE
ALKYAIDREAILKGVLGGFGTIGNDYPINANYALAPADIEQRNYDPDKAAFHFKKSGLQD
EEEEHHCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHHHCCCCC
PILLRTSEAAFPGAVDAAQLFQLSAEKAGIKINVQREPSDGYWSEVWNVKPFCTSFWGGR
CEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCHHHHHHCCCC
PTQDARYSTSYVSNAEWNDTRFKRPDFDKMVVQARGELDETKRRVLYRDMALMVRDEGGL
CCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHEEEEEECCCCE
ILPVFNDFINACTSHLKGFVPDIGNDFSNGRIASRVWLEA
EEHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA