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The map label for this gene is occM [H]

Identifier: 13475816

GI number: 13475816

Start: 5747195

End: 5747887

Strand: Reverse

Name: occM [H]

Synonym: mll6985

Alternate gene names: 13475816

Gene position: 5747887-5747195 (Counterclockwise)

Preceding gene: 13475817

Following gene: 13475814

Centisome position: 81.69

GC content: 59.16

Gene sequence:

>693_bases
GTGATCGACTTCGCCTTCTTTCTCGAGATCATTCCCGTCCTGCTTGCTGGCCTGCCATTGACACTGCTGCTTACAACAGC
CTCGATGGTCATCGGCTTCTTTTTGGCATTGCTGCTGGCGCTCGCCCAACAGGGAAATCGCCGCATCGTGATATGGCCCA
TCCGTGCCTTCGTTGCAGTCTTTCGCGGCACCCCCCTGCTGGTACAGATCTTCCTCATCTACTATGGTCTCGGCCAGTTT
CGCCCGTCGCTCCAGGCGATCGGAATCTGGTGGCTCTTCCGGGAGCCGTACTGGTGCGCCATCGTGGCGCTCAGTCTCAA
TGAAGCAGCTTATGGAAGCGAAATCCTGCGCGGCGCAATCAAGGCCGTGCCGCGAGGATTGACCGAGGCCGCTACAGCCT
CCGGCATGTCGAAGCTGCTCACGCTGCGGCTAATCGTGCTGCCGCTGGCCCTTCGCAATGCGATCCCGAATTACACCAAC
GAGATCATCCTGATGGTCAAGGGCACGTCGCTTGCATCCATCATTACCCTCATGGAGATCACCGGTATCGCGCAAGGGCT
CATTTCGCAGACCTATCGCGCCGTGGAGGTTTTCGTGGCTGCCGGTGCGATCTATCTGACCCTCAACTTCGCAATCATCT
CGGCGCTGAACGCGCTGGAAACTCGGCTGACGCCCTACCGGGTCCGCGCATGA

Upstream 100 bases:

>100_bases
TCTATGTTGCCGCTGCCGCGCTCTACTTCGTCATCGCCGTCGTGACCGCTTCCGTCTTCCGTTTTAGTGAGGCACGGGCC
TGGAGAGGCATGGTTCACGC

Downstream 100 bases:

>100_bases
AAAGTGCCGGTGTCATGACGAGGAGATCTGGCGGCATGCGCCGCTGTCGAAAAGCCGAGCGACGCGCTGCCGTGTCGTGT
CAAGCGATGGCGGTAACGTC

Product: ABC transporter, permease protein

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIDFAFFLEIIPVLLAGLPLTLLLTTASMVIGFFLALLLALAQQGNRRIVIWPIRAFVAVFRGTPLLVQIFLIYYGLGQF
RPSLQAIGIWWLFREPYWCAIVALSLNEAAYGSEILRGAIKAVPRGLTEAATASGMSKLLTLRLIVLPLALRNAIPNYTN
EIILMVKGTSLASIITLMEITGIAQGLISQTYRAVEVFVAAGAIYLTLNFAIISALNALETRLTPYRVRA

Sequences:

>Translated_230_residues
MIDFAFFLEIIPVLLAGLPLTLLLTTASMVIGFFLALLLALAQQGNRRIVIWPIRAFVAVFRGTPLLVQIFLIYYGLGQF
RPSLQAIGIWWLFREPYWCAIVALSLNEAAYGSEILRGAIKAVPRGLTEAATASGMSKLLTLRLIVLPLALRNAIPNYTN
EIILMVKGTSLASIITLMEITGIAQGLISQTYRAVEVFVAAGAIYLTLNFAIISALNALETRLTPYRVRA
>Mature_230_residues
MIDFAFFLEIIPVLLAGLPLTLLLTTASMVIGFFLALLLALAQQGNRRIVIWPIRAFVAVFRGTPLLVQIFLIYYGLGQF
RPSLQAIGIWWLFREPYWCAIVALSLNEAAYGSEILRGAIKAVPRGLTEAATASGMSKLLTLRLIVLPLALRNAIPNYTN
EIILMVKGTSLASIITLMEITGIAQGLISQTYRAVEVFVAAGAIYLTLNFAIISALNALETRLTPYRVRA

Specific function: Component of the octopine active transport system probably consisting of four subunits:Q, M, P and T [H]

COG id: COG4160

COG function: function code E; ABC-type arginine/histidine transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787086, Length=202, Percent_Identity=47.5247524752475, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=38.4615384615385, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788226, Length=221, Percent_Identity=37.5565610859729, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787030, Length=222, Percent_Identity=31.981981981982, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=29.0178571428571, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786873, Length=209, Percent_Identity=30.622009569378, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788646, Length=219, Percent_Identity=30.1369863013699, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786874, Length=219, Percent_Identity=28.7671232876712, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082239, Length=215, Percent_Identity=30.2325581395349, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=179, Percent_Identity=32.9608938547486, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25228; Mature: 25228

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFAFFLEIIPVLLAGLPLTLLLTTASMVIGFFLALLLALAQQGNRRIVIWPIRAFVAV
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
FRGTPLLVQIFLIYYGLGQFRPSLQAIGIWWLFREPYWCAIVALSLNEAAYGSEILRGAI
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCEEEEEEEECCCHHHHHHHHHHHH
KAVPRGLTEAATASGMSKLLTLRLIVLPLALRNAIPNYTNEIILMVKGTSLASIITLMEI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
TGIAQGLISQTYRAVEVFVAAGAIYLTLNFAIISALNALETRLTPYRVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MIDFAFFLEIIPVLLAGLPLTLLLTTASMVIGFFLALLLALAQQGNRRIVIWPIRAFVAV
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
FRGTPLLVQIFLIYYGLGQFRPSLQAIGIWWLFREPYWCAIVALSLNEAAYGSEILRGAI
HCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCEEEEEEEECCCHHHHHHHHHHHH
KAVPRGLTEAATASGMSKLLTLRLIVLPLALRNAIPNYTNEIILMVKGTSLASIITLMEI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHH
TGIAQGLISQTYRAVEVFVAAGAIYLTLNFAIISALNALETRLTPYRVRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA