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The map label for this gene is ybhD [H]

Identifier: 13475811

GI number: 13475811

Start: 5741830

End: 5742729

Strand: Direct

Name: ybhD [H]

Synonym: mlr6981

Alternate gene names: 13475811

Gene position: 5741830-5742729 (Clockwise)

Preceding gene: 13475805

Following gene: 13475815

Centisome position: 81.61

GC content: 58.78

Gene sequence:

>900_bases
ATGAGCATTAATTGCGAAATCCTTGACCTTCGAGCCTTCCTAAGCGTCGTAGAGTTGGAGAGCTTTCATCGCGCGGCCGA
AGCCCTGCATCTGTCACAACCCGCGTTGAGCCGCCGCATTCAAAAATTGGAGCAGGCTATCGGAGCTCCCATTTTGGAAC
GGACAACCCGGCACGTATCCGCGACGGCTCTCGGCATAGAACTCGTGCCGCTCGTGCGACGCATGCTGGAGGAGTTCGAC
GGCTCTCTGTTTGCCGTGCGTGACGTTGGAACCAACCGAGGTGGATTGGTAACGATCGCGTGCCTCCCCACCGCGGCATT
CTACTTCCTGCCGACCGTCATCCGACAGTTCAATGAGGAGTATCCGAACATCCGCTTTCGCATCCTCGACTTGCCGGCGA
CCGACGGTCTTCAAGCCGTGGCGCGCGGTGAGGTGGAGTTCGGCATAAACATCATGGGCACGTCGGATCCGGACCTGACT
TTTGATCGGCTCGCGGAAGACCCGTTTGTGCTTGCAGCGCGGAGGGATCACCCTCTGGCTGCCAAACCATCGGTCGGCTG
GGCGGACCTAGAGCCCTATCATCTGATCACGGTTCATCGATCAAGCGGCAACAGAACGCTGCTCGACGCGGCGCTGGCAA
AATCGAACATAAAGCTTCGTTGGTTCTACGAGGTAACCCATCTGTCCACCTCCCTCGGTTTGGTGGAGGCAGGCCTCGGG
ATTTCCGTCCTGCCACGAATGGCGACGCCGGGAGGAGACCATCCGTTTCTGATCACCCGACCCATCCGTGATCCCGAAAT
ATCACGCACGATTGGCGTGGTTCGCCGTCGCGGCGGCACCTTGTCGCCTGCAGCGGAGCGATTCCTTAAGATGCTGATAG
GTGTCTGGGCAAGTGATTGA

Upstream 100 bases:

>100_bases
TCGGAATTATGTCACCGCCGTATCAATTGGCGCTGTTTGATCCAATTATCGGAAGAAGCTTTTATTTGTGAAATGCTAAG
AATCGGGGGATTGATGCAAG

Downstream 100 bases:

>100_bases
AAAGCAGTCAGAAAATCGACAGGCGTAGAACCAGAAGCCGTAGCCGGCCGCTTGTCGAAAAACCAGTCATTAAAGCGGAG
ATGGTGGAGCGTTGAATTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSINCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSATALGIELVPLVRRMLEEFD
GSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLT
FDRLAEDPFVLAARRDHPLAAKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLG
ISVLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD

Sequences:

>Translated_299_residues
MSINCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSATALGIELVPLVRRMLEEFD
GSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLT
FDRLAEDPFVLAARRDHPLAAKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLG
ISVLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD
>Mature_298_residues
SINCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVSATALGIELVPLVRRMLEEFDG
SLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEEYPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLTF
DRLAEDPFVLAARRDHPLAAKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLGI
SVLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=294, Percent_Identity=48.2993197278912, Blast_Score=294, Evalue=4e-81,
Organism=Escherichia coli, GI1788748, Length=284, Percent_Identity=34.1549295774648, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=28.7719298245614, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790399, Length=283, Percent_Identity=29.3286219081272, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=28.9256198347107, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=30.3643724696356, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=28.8888888888889, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787530, Length=279, Percent_Identity=27.2401433691756, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789204, Length=238, Percent_Identity=28.9915966386555, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI2367136, Length=256, Percent_Identity=27.734375, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI87081904, Length=175, Percent_Identity=32.5714285714286, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1790208, Length=144, Percent_Identity=31.9444444444444, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787589, Length=173, Percent_Identity=31.2138728323699, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=24.5833333333333, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082132, Length=295, Percent_Identity=24.406779661017, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=121, Percent_Identity=33.8842975206612, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=25.886524822695, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788296, Length=279, Percent_Identity=25.4480286738351, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787128, Length=151, Percent_Identity=29.1390728476821, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33008; Mature: 32876

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVS
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ATALGIELVPLVRRMLEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEE
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCC
YPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLA
CCCEEEEEEECCCCCCHHHHHCCCEEECEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC
AKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLG
CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHCCCC
ISVLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD
HHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SINCEILDLRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRHVS
CCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ATALGIELVPLVRRMLEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIRQFNEE
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCC
YPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARRDHPLA
CCCEEEEEEECCCCCCHHHHHCCCEEECEEEECCCCCCCCHHHHCCCCEEEEECCCCCCC
AKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLVEAGLG
CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHCCCC
ISVLPRMATPGGDHPFLITRPIRDPEISRTIGVVRRRGGTLSPAAERFLKMLIGVWASD
HHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]