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The map label for this gene is yafC [C]

Identifier: 13475791

GI number: 13475791

Start: 5719922

End: 5720233

Strand: Direct

Name: yafC [C]

Synonym: mlr6958

Alternate gene names: 13475791

Gene position: 5719922-5720233 (Clockwise)

Preceding gene: 13475789

Following gene: 13474962

Centisome position: 81.29

GC content: 56.41

Gene sequence:

>312_bases
GTGCCGCGCAACCGATGGCCCTTTATTGGGCCAAGTGGGGAAGAACTCACGGTCACTGTAGGGGGCGGGATCGAGGTCGA
CCTTGATGAAGCTCAGCGCAAGCTCGCCATCGATGGTGCCGGTATTGCTTGTTTGCCGCTAGATCTAGTGAAAGGCGATC
TTGCTGAAGGGCGCCTGGTGTCGATGTTTTCAGACTGGACCATGCCAACGATGCCCATACACACCGTTCAGCCCTCCCGC
CGCTTTGTTCCCCAAAGGGTAAGGGAGTTTCTGACAGTTTTGGCAGCCAGTTTCAGTGACGATCCCATCTGA

Upstream 100 bases:

>100_bases
TTTCGCCTGCTGCGCACCTCCAGACTTTGTCCGACGCTACGGCAAGCTCATCCATCCCAGTCAGCTGTCGCAGGCGCGTT
GCTTGCTCAATCTCAATTTT

Downstream 100 bases:

>100_bases
CATTAAGCGAGCACCTAGGCCAAAGCCAGCAAGCGGAATGTCCCGCTCGCGCAAAGCTCCTGTAGGGTGGCCCCGGCAAC
TTACGGCGAGAGCAGGGCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family; Transcriptional Regulator; Transcriptional Regulators LysR Family

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MPRNRWPFIGPSGEELTVTVGGGIEVDLDEAQRKLAIDGAGIACLPLDLVKGDLAEGRLVSMFSDWTMPTMPIHTVQPSR
RFVPQRVREFLTVLAASFSDDPI

Sequences:

>Translated_103_residues
MPRNRWPFIGPSGEELTVTVGGGIEVDLDEAQRKLAIDGAGIACLPLDLVKGDLAEGRLVSMFSDWTMPTMPIHTVQPSR
RFVPQRVREFLTVLAASFSDDPI
>Mature_102_residues
PRNRWPFIGPSGEELTVTVGGGIEVDLDEAQRKLAIDGAGIACLPLDLVKGDLAEGRLVSMFSDWTMPTMPIHTVQPSRR
FVPQRVREFLTVLAASFSDDPI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11308; Mature: 11177

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNRWPFIGPSGEELTVTVGGGIEVDLDEAQRKLAIDGAGIACLPLDLVKGDLAEGRLV
CCCCCCCCCCCCCCEEEEEECCCEEEEHHHHCCEEECCCCCEEEEEHHHHCCCCCCCEEE
SMFSDWTMPTMPIHTVQPSRRFVPQRVREFLTVLAASFSDDPI
EEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PRNRWPFIGPSGEELTVTVGGGIEVDLDEAQRKLAIDGAGIACLPLDLVKGDLAEGRLV
CCCCCCCCCCCCCEEEEEECCCEEEEHHHHCCEEECCCCCEEEEEHHHHCCCCCCCEEE
SMFSDWTMPTMPIHTVQPSRRFVPQRVREFLTVLAASFSDDPI
EEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA