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The map label for this gene is xpsF [H]

Identifier: 13475688

GI number: 13475688

Start: 5612911

End: 5614128

Strand: Direct

Name: xpsF [H]

Synonym: mlr6821

Alternate gene names: 13475688

Gene position: 5612911-5614128 (Clockwise)

Preceding gene: 13475687

Following gene: 13475689

Centisome position: 79.77

GC content: 65.93

Gene sequence:

>1218_bases
ATGCCGGCCTTCGCCTATCGCGCCTACCTGGCCGACGGCTCGACGGAGGCCGGCGTTCTCGATGCGTCGACCAAACAGGA
CGCCGCCCGAAAACTGGCGCAGCAGGGTCGCCGGTCCTACCATCTTGCACCCGTGAACAGCGAAAGGCCGCAGCTTCGCC
TGCCGGGCCGCAGCGCGCTGACGCTGACCCGCAGGGTCGACCTCAGCCGCTTGTTCTCCGAGCTTTCGGTTCTCCTGAAC
GCCGGCTTCACGGTCGACCGCGCCCTGGGCGCGGTCATTTCGGGCGAAGCCAACCGGCAGCGGCGCCAGCAACTGCAATC
GGTGCTCGACCTGACGACCGGCGGCCGGCCGATCGCCGAAGCCTTTGCCGCACTGCCGGGCATCACGCCGGACGTTGCCG
CCTTGCTTGCCAGCGGCGAGCGCAGCGGCAAGATGGCCTTTATCTGCCAGCGGCTGGCGGACACGTTCGAGGCGACGGCC
AAGCGCCGCGCCGCGATCATCGAGGCGTTGGCCTATCCGGCCTTCCTGCTCCTGGTCATGAGCGGGGCACTCGTCATTCT
GGCGACGGTCCTGGTGCCGGCGCTGGAGCCGATCTTCGAGGGCTCGTCGGCCCCCAAGCCCTTCACCATGACCATGCTTT
CCGCCTTCGGCACGGTGTTCCGCGACTACCCCTTCGTTTTCCCGCTGGCGGCGGTGCTCGGCCTGCTTTGCTATCTCCTG
CTGTCCCGTTCCGCCGGCGCCAGAAGACGGCTTTCGCACTGGCTGCTGCGGATCCCGCTGATCGGCGCGCTGGTCAGGGA
CGCGGTGATCGCGCGCTATCTCGAAACGCTTGCGCTGCTGCTCGGCAACGGCGTGGCGATGACCGAGGCGCTTGGCCTTG
CCGCCAATGTTTCCAGGCAGAGTTCGTTGGCGACAAGCTTCGCATCGATCGAAGACAATGTCGCCAATGGCGCCCGCCTG
CACGGCGCGATCGTCAAGGCAGGGATTTTCGACCACGCGACAATGTCGCTGGTCTCCCTTGGCGAAGAGGCCAATGCACT
TCCCGTGGTGCTGGATCGCGCCGCTAAAATGCTTCAGCTGACGCTGACGCGGCGGATCGACACCGTGCTGAAGCTGCTGA
CGCCAGCGCTGACGATCTCGCTCGGTTTTCTCGTCGGCAGCCTGGTCATTTCGGTTATGACGACGATCCTCTCCATCAAC
GATCTGGCGCTGCAATGA

Upstream 100 bases:

>100_bases
ACCTGGTGCCGATGTCGGTCCACGCAACCGCCCTTGCCCGATCGCAGGTCACCACAATGGACGAGGTCCGCCGTGTCATC
GATCTGGCGGGAGCTGACTG

Downstream 100 bases:

>100_bases
CCGCCGCTCCCGCAGCCGACACGCAGGCACACGCGACGGCGGGGTTCACCCTGGTCGAGATGCTGGTGGTGCTGGCGATC
ATGGCGCTTGTCGCCGCCAT

Product: general secretion proteinF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPAFAYRAYLADGSTEAGVLDASTKQDAARKLAQQGRRSYHLAPVNSERPQLRLPGRSALTLTRRVDLSRLFSELSVLLN
AGFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAEAFAALPGITPDVAALLASGERSGKMAFICQRLADTFEATA
KRRAAIIEALAYPAFLLLVMSGALVILATVLVPALEPIFEGSSAPKPFTMTMLSAFGTVFRDYPFVFPLAAVLGLLCYLL
LSRSAGARRRLSHWLLRIPLIGALVRDAVIARYLETLALLLGNGVAMTEALGLAANVSRQSSLATSFASIEDNVANGARL
HGAIVKAGIFDHATMSLVSLGEEANALPVVLDRAAKMLQLTLTRRIDTVLKLLTPALTISLGFLVGSLVISVMTTILSIN
DLALQ

Sequences:

>Translated_405_residues
MPAFAYRAYLADGSTEAGVLDASTKQDAARKLAQQGRRSYHLAPVNSERPQLRLPGRSALTLTRRVDLSRLFSELSVLLN
AGFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAEAFAALPGITPDVAALLASGERSGKMAFICQRLADTFEATA
KRRAAIIEALAYPAFLLLVMSGALVILATVLVPALEPIFEGSSAPKPFTMTMLSAFGTVFRDYPFVFPLAAVLGLLCYLL
LSRSAGARRRLSHWLLRIPLIGALVRDAVIARYLETLALLLGNGVAMTEALGLAANVSRQSSLATSFASIEDNVANGARL
HGAIVKAGIFDHATMSLVSLGEEANALPVVLDRAAKMLQLTLTRRIDTVLKLLTPALTISLGFLVGSLVISVMTTILSIN
DLALQ
>Mature_404_residues
PAFAYRAYLADGSTEAGVLDASTKQDAARKLAQQGRRSYHLAPVNSERPQLRLPGRSALTLTRRVDLSRLFSELSVLLNA
GFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAEAFAALPGITPDVAALLASGERSGKMAFICQRLADTFEATAK
RRAAIIEALAYPAFLLLVMSGALVILATVLVPALEPIFEGSSAPKPFTMTMLSAFGTVFRDYPFVFPLAAVLGLLCYLLL
SRSAGARRRLSHWLLRIPLIGALVRDAVIARYLETLALLLGNGVAMTEALGLAANVSRQSSLATSFASIEDNVANGARLH
GAIVKAGIFDHATMSLVSLGEEANALPVVLDRAAKMLQLTLTRRIDTVLKLLTPALTISLGFLVGSLVISVMTTILSIND
LALQ

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=403, Percent_Identity=27.5434243176179, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1786295, Length=405, Percent_Identity=24.4444444444444, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43176; Mature: 43045

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFAYRAYLADGSTEAGVLDASTKQDAARKLAQQGRRSYHLAPVNSERPQLRLPGRSAL
CCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEECCCCHHH
TLTRRVDLSRLFSELSVLLNAGFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHH
AFAALPGITPDVAALLASGERSGKMAFICQRLADTFEATAKRRAAIIEALAYPAFLLLVM
HHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGALVILATVLVPALEPIFEGSSAPKPFTMTMLSAFGTVFRDYPFVFPLAAVLGLLCYLL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LSRSAGARRRLSHWLLRIPLIGALVRDAVIARYLETLALLLGNGVAMTEALGLAANVSRQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHH
SSLATSFASIEDNVANGARLHGAIVKAGIFDHATMSLVSLGEEANALPVVLDRAAKMLQL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
TLTRRIDTVLKLLTPALTISLGFLVGSLVISVMTTILSINDLALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAFAYRAYLADGSTEAGVLDASTKQDAARKLAQQGRRSYHLAPVNSERPQLRLPGRSAL
CCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCCEECCCCHHH
TLTRRVDLSRLFSELSVLLNAGFTVDRALGAVISGEANRQRRQQLQSVLDLTTGGRPIAE
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHH
AFAALPGITPDVAALLASGERSGKMAFICQRLADTFEATAKRRAAIIEALAYPAFLLLVM
HHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGALVILATVLVPALEPIFEGSSAPKPFTMTMLSAFGTVFRDYPFVFPLAAVLGLLCYLL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LSRSAGARRRLSHWLLRIPLIGALVRDAVIARYLETLALLLGNGVAMTEALGLAANVSRQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHH
SSLATSFASIEDNVANGARLHGAIVKAGIFDHATMSLVSLGEEANALPVVLDRAAKMLQL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
TLTRRIDTVLKLLTPALTISLGFLVGSLVISVMTTILSINDLALQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]